Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00032
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936...    27   7.7  
02_05_1067 - 33858215-33858321,33858422-33858527,33859014-338592...    27   7.7  

>09_04_0037 +
           13992103-13992624,13993001-13993180,13993423-13993691,
           13994120-13995773
          Length = 874

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 264 SPVSSWSNVGRTGDVLPTPLSNVETRPSP 350
           +PVSS+   GR   + PTP +N + RP P
Sbjct: 505 TPVSSFQR-GRAVTMTPTPQNNPQRRPPP 532


>02_05_1067 -
           33858215-33858321,33858422-33858527,33859014-33859218,
           33859463-33859650,33859780-33859957,33860201-33860298,
           33860619-33860873,33861002-33861236,33861846-33861973
          Length = 499

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 184 FLHLVALGVLAAIVRDPRLLDELDVSHPQ*VRGAMWGALEMYCPHHCQMWKLVPAHTLNM 363
           F  L  + + A + +DP  L +L++ HP  +     G      P   Q +KLV    L  
Sbjct: 250 FPRLAKIVLSATLTQDPSKLSQLELQHPLLLNS---GKKRYRIPTKLQSYKLVCKSNLKP 306

Query: 364 LHILV 378
           L ++V
Sbjct: 307 LSLIV 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,748,970
Number of Sequences: 37544
Number of extensions: 416078
Number of successful extensions: 1215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)