Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00032
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   4e-06
SB_33958| Best HMM Match : MAM (HMM E-Value=1.1e-32)                   31   0.84 
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_23376| Best HMM Match : GPS (HMM E-Value=1.2)                       29   3.4  
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_11584| Best HMM Match : Peptidase_M28 (HMM E-Value=6.1e-11)         28   4.5  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   28   4.5  
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)                28   5.9  
SB_933| Best HMM Match : ExoD (HMM E-Value=6)                          27   7.9  

>SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 19/41 (46%), Positives = 28/41 (68%)
 Frame = +1

Query: 127 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDE 249
           CC C+ VR GTI+LG  HLF+H+  + VLA ++  P + +E
Sbjct: 20  CCCCMDVRIGTIVLGFCHLFIHIAGVVVLAQMLLHPEVYEE 60


>SB_33958| Best HMM Match : MAM (HMM E-Value=1.1e-32)
          Length = 1052

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 26/95 (27%), Positives = 42/95 (44%)
 Frame = +3

Query: 267 PVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYLGTMALTLIMIYGAARG 446
           P++ WS +G   D      S+  TR    ++  +    +SL  L T     +   G+  G
Sbjct: 583 PLNKWSYIGVVYDY-----SSGLTRLFVKNETVTSRRIYSLTRLDTRGDVRV---GSLPG 634

Query: 447 KPGYLLPFFCLQIFDFAITILRQLAICVTCVKSMP 551
           + GY     CLQI+D A++  + L +   C K  P
Sbjct: 635 RTGYKGRISCLQIYDVALSDWKVLDVREICTKKEP 669


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 133 FCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDE 249
           FCL +      LG++HLF  L+ + V  A++ D   +DE
Sbjct: 494 FCLKIFGTGKKLGTYHLFSSLIIMSVFVAVIVDNLEIDE 532


>SB_23376| Best HMM Match : GPS (HMM E-Value=1.2)
          Length = 368

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 285 NVGRTGDVLPTPLSNVETRPSPYSQHA-SHPSDHSLIYL 398
           N   T    P+PL +   RP P S+HA +  +D  LIYL
Sbjct: 207 NSSLTDGFFPSPLKSAIARPLPKSKHAKTVENDVRLIYL 245


>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1271

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +3

Query: 177 APFPAPSGTRSFSSDCA*SSIAG*TGRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYS 356
           A  P P  +++  ++    +       +S+PV   S V     + P   +  +T+P+P  
Sbjct: 447 AQAPVPQTSQAAQANTLPQTADKPQAHQSNPVPEVSQVAPKASLAPKANALPQTKPTPQD 506

Query: 357 QHASHPSD 380
           Q AS  SD
Sbjct: 507 QDASGDSD 514


>SB_11584| Best HMM Match : Peptidase_M28 (HMM E-Value=6.1e-11)
          Length = 531

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 294 APHCSTNSLGMTHVQFIQQSRITHNR 217
           AP+ +  +L  THV FIQ+   TH R
Sbjct: 11  APYMALATLLFTHVAFIQECNATHTR 36


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 138 PTCSDWHNYSGIMAPFPAP 194
           P C DW  Y GI AP  AP
Sbjct: 14  PACYDWCCYGGISAPTQAP 32


>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
          Length = 607

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 312 PTPLSNVETRPSPYSQHASHPSDHS 386
           P P S V T+P P+S   + P  HS
Sbjct: 100 PQPHSAVHTKPQPHSAATTQPQPHS 124


>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
          Length = 555

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 506 NGDSKVEDLKTEEGQQIARFPTSGAVDHNQCE 411
           NG  + EDL T+EG+  A+   +     N CE
Sbjct: 257 NGGDETEDLFTQEGKTSAKEAKNSNCKRNSCE 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,973,591
Number of Sequences: 59808
Number of extensions: 453654
Number of successful extensions: 1180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)