Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00032
(558 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC038117-1|AAH38117.1| 317|Homo sapiens LAPTM4B protein protein. 50 4e-06
BC031021-1|AAH31021.1| 226|Homo sapiens LAPTM4B protein protein. 50 4e-06
BC014129-1|AAH14129.1| 226|Homo sapiens LAPTM4B protein protein. 50 4e-06
AY261384-1|AAO84265.1| 370|Homo sapiens lysosome-associated tra... 50 4e-06
AY057051-1|AAL17908.2| 317|Homo sapiens lysosomal associated tr... 50 4e-06
AK075326-1|BAC11549.1| 226|Homo sapiens protein ( Homo sapiens ... 50 4e-06
AJ276485-1|CAB81951.1| 283|Homo sapiens integral membrane trans... 50 4e-06
AF527412-1|AAP14034.1| 317|Homo sapiens lysosomal associated tr... 50 4e-06
AF317417-1|AAK69595.1| 226|Homo sapiens lysosomal-associated tr... 50 4e-06
D14696-1|BAA03522.2| 254|Homo sapiens KIAA0108 protein. 48 3e-05
CR456758-1|CAG33039.1| 233|Homo sapiens LAPTM4A protein. 48 3e-05
BC093075-1|AAH93075.1| 233|Homo sapiens lysosomal-associated pr... 48 3e-05
BC003158-1|AAH03158.1| 233|Homo sapiens lysosomal-associated pr... 48 3e-05
BC000421-1|AAH00421.1| 233|Homo sapiens lysosomal-associated pr... 48 3e-05
AY359028-1|AAQ89387.1| 215|Homo sapiens MTP protein. 48 3e-05
AC098828-1|AAY24172.1| 38|Homo sapiens unknown protein. 41 0.003
AY219177-1|AAO64359.1| 124|Homo sapiens lysosome-associated pro... 40 0.004
AY219176-1|AAO64358.1| 124|Homo sapiens lysosome-associated pro... 40 0.004
AY198226-1|AAO63563.1| 124|Homo sapiens LAPTM4B protein. 40 0.004
AC079145-1|AAX88938.1| 196|Homo sapiens unknown protein. 39 0.014
AY464186-1|AAS46603.1| 281|Homo sapiens complement inhibitory r... 38 0.024
U51240-1|AAB08975.1| 262|Homo sapiens lysosomal-associated mult... 33 0.90
U30498-1|AAA74018.1| 262|Homo sapiens E3 protein protein. 33 0.90
D42042-1|BAA07643.1| 269|Homo sapiens KIAA0085 protein. 33 0.90
BC106897-1|AAI06898.1| 262|Homo sapiens lysosomal associated mu... 33 0.90
BC106896-1|AAI06897.1| 262|Homo sapiens lysosomal associated mu... 33 0.90
AL137857-1|CAI19321.1| 262|Homo sapiens lysosomal associated mu... 33 0.90
AL137027-1|CAI19267.1| 262|Homo sapiens lysosomal associated mu... 33 0.90
AL139100-5|CAI20353.1| 1440|Homo sapiens RP3-349A12.1 protein. 32 1.6
AL033520-3|CAI20282.1| 1440|Homo sapiens RP3-349A12.1 protein. 32 1.6
AB126777-1|BAD32740.1| 1440|Homo sapiens ICBP90 binding protein ... 32 1.6
BC041629-1|AAH41629.1| 264|Homo sapiens MAZ protein protein. 29 8.4
AF489858-1|AAN03800.1| 493|Homo sapiens serum amyloid A activat... 29 8.4
>BC038117-1|AAH38117.1| 317|Homo sapiens LAPTM4B protein protein.
Length = 317
Score = 50.4 bits (115), Expect = 4e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 127 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 234
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 106 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 141
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 429 YGAARGKPGYLLPFFCLQIFDFAITILRQLAICV 530
YGA + + +++PFFC QIFDFA+ +L + + +
Sbjct: 182 YGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLI 215
>BC031021-1|AAH31021.1| 226|Homo sapiens LAPTM4B protein protein.
Length = 226
Score = 50.4 bits (115), Expect = 4e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 127 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 234
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 15 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 50
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 429 YGAARGKPGYLLPFFCLQIFDFAITILRQLAICV 530
YGA + + +++PFFC QIFDFA+ +L + + +
Sbjct: 91 YGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLI 124
>BC014129-1|AAH14129.1| 226|Homo sapiens LAPTM4B protein protein.
Length = 226
Score = 50.4 bits (115), Expect = 4e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 127 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 234
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 15 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 50
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 429 YGAARGKPGYLLPFFCLQIFDFAITILRQLAICV 530
YGA + + +++PFFC QIFDFA+ +L + + +
Sbjct: 91 YGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLI 124
>AY261384-1|AAO84265.1| 370|Homo sapiens lysosome-associated
transmembrane protein 4 beta protein.
Length = 370
Score = 50.4 bits (115), Expect = 4e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 127 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 234
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 159 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 194
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 429 YGAARGKPGYLLPFFCLQIFDFAITILRQLAICV 530
YGA + + +++PFFC QIFDFA+ +L + + +
Sbjct: 235 YGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLI 268
>AY057051-1|AAL17908.2| 317|Homo sapiens lysosomal associated
transmembrane protein 4 beta, variant 1 protein.
Length = 317
Score = 50.4 bits (115), Expect = 4e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 127 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 234
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 106 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 141
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 429 YGAARGKPGYLLPFFCLQIFDFAITILRQLAICV 530
YGA + + +++PFFC QIFDFA+ +L + + +
Sbjct: 182 YGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLI 215
>AK075326-1|BAC11549.1| 226|Homo sapiens protein ( Homo sapiens
cDNA PSEC0001 fis, clone NT2RM1000066, moderately
similar to Lysosomal-associated transmembrane protein 4
beta. ).
Length = 226
Score = 50.4 bits (115), Expect = 4e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 127 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 234
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 15 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 50
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 429 YGAARGKPGYLLPFFCLQIFDFAITILRQLAICV 530
YGA + + +++PFFC QIFDFA+ +L + + +
Sbjct: 91 YGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLI 124
>AJ276485-1|CAB81951.1| 283|Homo sapiens integral membrane
transporter protein protein.
Length = 283
Score = 50.4 bits (115), Expect = 4e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 127 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 234
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 72 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 107
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 429 YGAARGKPGYLLPFFCLQIFDFAITILRQLAICV 530
YGA + + +++PFFC QIFDFA+ +L + + +
Sbjct: 148 YGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLI 181
>AF527412-1|AAP14034.1| 317|Homo sapiens lysosomal associated
transmembrane protein 4 beta variant 2 protein.
Length = 317
Score = 50.4 bits (115), Expect = 4e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 127 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 234
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 106 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 141
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 429 YGAARGKPGYLLPFFCLQIFDFAITILRQLAICV 530
YGA + + +++PFFC QIFDFA+ +L + + +
Sbjct: 182 YGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLI 215
>AF317417-1|AAK69595.1| 226|Homo sapiens lysosomal-associated
transmembrane protein 4 beta protein.
Length = 226
Score = 50.4 bits (115), Expect = 4e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 127 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 234
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 15 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 50
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +3
Query: 429 YGAARGKPGYLLPFFCLQIFDFAITILRQLAICV 530
YGA + + +++PFFC QIFDFA+ +L + + +
Sbjct: 91 YGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLI 124
>D14696-1|BAA03522.2| 254|Homo sapiens KIAA0108 protein.
Length = 254
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 103 SERGSEWLCCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDVSH 264
S+R CC C HVRTGTIILG+W++ ++L+ +L V P + +++ +
Sbjct: 32 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQY 85
Score = 38.7 bits (86), Expect = 0.014
Identities = 13/33 (39%), Positives = 25/33 (75%)
Frame = +3
Query: 411 LTLIMIYGAARGKPGYLLPFFCLQIFDFAITIL 509
++ +++YGA + G+L+PFFC ++FDF ++ L
Sbjct: 114 ISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 146
>CR456758-1|CAG33039.1| 233|Homo sapiens LAPTM4A protein.
Length = 233
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 103 SERGSEWLCCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDVSH 264
S+R CC C HVRTGTIILG+W++ ++L+ +L V P + +++ +
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQY 64
Score = 38.7 bits (86), Expect = 0.014
Identities = 13/33 (39%), Positives = 25/33 (75%)
Frame = +3
Query: 411 LTLIMIYGAARGKPGYLLPFFCLQIFDFAITIL 509
++ +++YGA + G+L+PFFC ++FDF ++ L
Sbjct: 93 ISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 125
>BC093075-1|AAH93075.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 103 SERGSEWLCCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDVSH 264
S+R CC C HVRTGTIILG+W++ ++L+ +L V P + +++ +
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQY 64
Score = 38.7 bits (86), Expect = 0.014
Identities = 13/33 (39%), Positives = 25/33 (75%)
Frame = +3
Query: 411 LTLIMIYGAARGKPGYLLPFFCLQIFDFAITIL 509
++ +++YGA + G+L+PFFC ++FDF ++ L
Sbjct: 93 ISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 125
>BC003158-1|AAH03158.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 103 SERGSEWLCCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDVSH 264
S+R CC C HVRTGTIILG+W++ ++L+ +L V P + +++ +
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQY 64
Score = 37.5 bits (83), Expect = 0.032
Identities = 12/33 (36%), Positives = 25/33 (75%)
Frame = +3
Query: 411 LTLIMIYGAARGKPGYLLPFFCLQIFDFAITIL 509
++ +++YG+ + G+L+PFFC ++FDF ++ L
Sbjct: 93 ISSMLVYGSISYQVGWLIPFFCYRLFDFVLSCL 125
>BC000421-1|AAH00421.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 103 SERGSEWLCCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDVSH 264
S+R CC C HVRTGTIILG+W++ ++L+ +L V P + +++ +
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQY 64
Score = 38.7 bits (86), Expect = 0.014
Identities = 13/33 (39%), Positives = 25/33 (75%)
Frame = +3
Query: 411 LTLIMIYGAARGKPGYLLPFFCLQIFDFAITIL 509
++ +++YGA + G+L+PFFC ++FDF ++ L
Sbjct: 93 ISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 125
>AY359028-1|AAQ89387.1| 215|Homo sapiens MTP protein.
Length = 215
Score = 47.6 bits (108), Expect = 3e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 103 SERGSEWLCCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDVSH 264
S+R CC C HVRTGTIILG+W++ ++L+ +L V P + +++ +
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQY 64
Score = 38.7 bits (86), Expect = 0.014
Identities = 13/33 (39%), Positives = 25/33 (75%)
Frame = +3
Query: 411 LTLIMIYGAARGKPGYLLPFFCLQIFDFAITIL 509
++ +++YGA + G+L+PFFC ++FDF ++ L
Sbjct: 93 ISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 125
>AC098828-1|AAY24172.1| 38|Homo sapiens unknown protein.
Length = 38
Score = 41.1 bits (92), Expect = 0.003
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +1
Query: 103 SERGSEWLCCFCLHVRTGTIILGSWHL 183
S+R CC C HVRTGTIILG+W++
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYM 37
>AY219177-1|AAO64359.1| 124|Homo sapiens lysosome-associated
protein transmembrane 4 beta protein.
Length = 124
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +1
Query: 127 CCFCLHVRTGTIILGSWHL 183
CC C HVRTGTI+LG W+L
Sbjct: 106 CCLCCHVRTGTILLGVWYL 124
>AY219176-1|AAO64358.1| 124|Homo sapiens lysosome-associated
protein transmembrane 4 beta protein.
Length = 124
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +1
Query: 127 CCFCLHVRTGTIILGSWHL 183
CC C HVRTGTI+LG W+L
Sbjct: 106 CCLCCHVRTGTILLGVWYL 124
>AY198226-1|AAO63563.1| 124|Homo sapiens LAPTM4B protein.
Length = 124
Score = 40.3 bits (90), Expect = 0.004
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +1
Query: 127 CCFCLHVRTGTIILGSWHL 183
CC C HVRTGTI+LG W+L
Sbjct: 106 CCLCCHVRTGTILLGVWYL 124
>AC079145-1|AAX88938.1| 196|Homo sapiens unknown protein.
Length = 196
Score = 38.7 bits (86), Expect = 0.014
Identities = 13/33 (39%), Positives = 25/33 (75%)
Frame = +3
Query: 411 LTLIMIYGAARGKPGYLLPFFCLQIFDFAITIL 509
++ +++YGA + G+L+PFFC ++FDF ++ L
Sbjct: 56 ISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 88
>AY464186-1|AAS46603.1| 281|Homo sapiens complement inhibitory
receptor protein.
Length = 281
Score = 37.9 bits (84), Expect = 0.024
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 402 TMALTLIMIYGAARGKPGYLLPFFCLQIFDFAITILRQL 518
++A M++GA +P +LLPFF +Q+FD I ++ L
Sbjct: 36 SLAFCCFMVHGAITKQPTHLLPFFFIQVFDLTICLIHIL 74
>U51240-1|AAB08975.1| 262|Homo sapiens lysosomal-associated
multitransmembrane protein protein.
Length = 262
Score = 32.7 bits (71), Expect = 0.90
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 411 LTLIMIYGAARGKPGYLLPFFCLQIFDFAITILRQL 518
++L ++ G + + YLLPF LQI D+ + +L L
Sbjct: 76 ISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLL 111
>U30498-1|AAA74018.1| 262|Homo sapiens E3 protein protein.
Length = 262
Score = 32.7 bits (71), Expect = 0.90
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 411 LTLIMIYGAARGKPGYLLPFFCLQIFDFAITILRQL 518
++L ++ G + + YLLPF LQI D+ + +L L
Sbjct: 76 ISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLL 111
>D42042-1|BAA07643.1| 269|Homo sapiens KIAA0085 protein.
Length = 269
Score = 32.7 bits (71), Expect = 0.90
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 411 LTLIMIYGAARGKPGYLLPFFCLQIFDFAITILRQL 518
++L ++ G + + YLLPF LQI D+ + +L L
Sbjct: 83 ISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLL 118
>BC106897-1|AAI06898.1| 262|Homo sapiens lysosomal associated
multispanning membrane protein 5 protein.
Length = 262
Score = 32.7 bits (71), Expect = 0.90
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 411 LTLIMIYGAARGKPGYLLPFFCLQIFDFAITILRQL 518
++L ++ G + + YLLPF LQI D+ + +L L
Sbjct: 76 ISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLL 111
>BC106896-1|AAI06897.1| 262|Homo sapiens lysosomal associated
multispanning membrane protein 5 protein.
Length = 262
Score = 32.7 bits (71), Expect = 0.90
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 411 LTLIMIYGAARGKPGYLLPFFCLQIFDFAITILRQL 518
++L ++ G + + YLLPF LQI D+ + +L L
Sbjct: 76 ISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLL 111
>AL137857-1|CAI19321.1| 262|Homo sapiens lysosomal associated
multispanning membrane protein 5 protein.
Length = 262
Score = 32.7 bits (71), Expect = 0.90
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 411 LTLIMIYGAARGKPGYLLPFFCLQIFDFAITILRQL 518
++L ++ G + + YLLPF LQI D+ + +L L
Sbjct: 76 ISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLL 111
>AL137027-1|CAI19267.1| 262|Homo sapiens lysosomal associated
multispanning membrane protein 5 protein.
Length = 262
Score = 32.7 bits (71), Expect = 0.90
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 411 LTLIMIYGAARGKPGYLLPFFCLQIFDFAITILRQL 518
++L ++ G + + YLLPF LQI D+ + +L L
Sbjct: 76 ISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLL 111
>AL139100-5|CAI20353.1| 1440|Homo sapiens RP3-349A12.1 protein.
Length = 1440
Score = 31.9 bits (69), Expect = 1.6
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Frame = +3
Query: 159 NYSGIMAPFPAPSGTRSFSSDCA*SSIA---G*TGRESSPVSSWSNVGRTGDVLPTPLSN 329
++ G+ P S SD + S + +G ES P S SNV V +PL N
Sbjct: 1106 SFDGVSLDSSGPEDRISVDSDGSDSFVMLLESESGPESVPPGSLSNVSDNAGVQGSPLVN 1165
Query: 330 VETRPSPYSQHASHPSDHSLIYLGTMALTL 419
+ SP + + PS LI+ L L
Sbjct: 1166 NYGQGSPAANSSVSPSGEDLIFHPVSVLVL 1195
>AL033520-3|CAI20282.1| 1440|Homo sapiens RP3-349A12.1 protein.
Length = 1440
Score = 31.9 bits (69), Expect = 1.6
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Frame = +3
Query: 159 NYSGIMAPFPAPSGTRSFSSDCA*SSIA---G*TGRESSPVSSWSNVGRTGDVLPTPLSN 329
++ G+ P S SD + S + +G ES P S SNV V +PL N
Sbjct: 1106 SFDGVSLDSSGPEDRISVDSDGSDSFVMLLESESGPESVPPGSLSNVSDNAGVQGSPLVN 1165
Query: 330 VETRPSPYSQHASHPSDHSLIYLGTMALTL 419
+ SP + + PS LI+ L L
Sbjct: 1166 NYGQGSPAANSSVSPSGEDLIFHPVSVLVL 1195
>AB126777-1|BAD32740.1| 1440|Homo sapiens ICBP90 binding protein 1
protein.
Length = 1440
Score = 31.9 bits (69), Expect = 1.6
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Frame = +3
Query: 159 NYSGIMAPFPAPSGTRSFSSDCA*SSIA---G*TGRESSPVSSWSNVGRTGDVLPTPLSN 329
++ G+ P S SD + S + +G ES P S SNV V +PL N
Sbjct: 1106 SFDGVSLDSSGPEDRISVDSDGSDSFVMLLESESGPESVPPGSLSNVSDNAGVQGSPLVN 1165
Query: 330 VETRPSPYSQHASHPSDHSLIYLGTMALTL 419
+ SP + + PS LI+ L L
Sbjct: 1166 NYGQGSPAANSSVSPSGEDLIFHPVSVLVL 1195
>BC041629-1|AAH41629.1| 264|Homo sapiens MAZ protein protein.
Length = 264
Score = 29.5 bits (63), Expect = 8.4
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +1
Query: 34 HILELTLEHFTTKAMLRFHP----KLGSERGSEWLCCFC-LHVRTGTIILGSWHLFLHL 195
H+ EL + FTT A LR H L + R LC C +H +T + G H+ HL
Sbjct: 190 HVCELCNKGFTTAAYLRIHAVKDHGLQAPRADRILCKLCSVHCKTPAQLAG--HMQTHL 246
>AF489858-1|AAN03800.1| 493|Homo sapiens serum amyloid A activating
factor 2 protein.
Length = 493
Score = 29.5 bits (63), Expect = 8.4
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +1
Query: 34 HILELTLEHFTTKAMLRFHP----KLGSERGSEWLCCFC-LHVRTGTIILGSWHLFLHL 195
H+ EL + FTT A LR H L + R LC C +H +T + G H+ HL
Sbjct: 419 HVCELCNKGFTTAAYLRIHAVKDHGLQAPRADRILCKLCSVHCKTPAQLAG--HMQTHL 475
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,731,185
Number of Sequences: 237096
Number of extensions: 2378364
Number of successful extensions: 5386
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 5127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5386
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5590411794
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -