Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00032
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical pr...    31   0.43 
AF317421-1|AAK69599.1|  235|Caenorhabditis elegans lysosomal-ass...    31   0.43 
AC006762-8|AAP31426.1|  295|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC006762-7|AAF60555.1|  375|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z19152-10|CAA79545.2|  348|Caenorhabditis elegans Hypothetical p...    28   4.0  
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    27   9.1  

>U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical
           protein C05E11.3 protein.
          Length = 235

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 106 ERGSEWLC-CFCLHVRTGTIILGSWHLFLHLVAL 204
           E   E+ C C C HV+TG  I+G  H+ + L  L
Sbjct: 33  ESSDEYRCLCNCFHVKTGAFIIGCVHVLMILFFL 66


>AF317421-1|AAK69599.1|  235|Caenorhabditis elegans
           lysosomal-associated transmembraneprotein protein.
          Length = 235

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 106 ERGSEWLC-CFCLHVRTGTIILGSWHLFLHLVAL 204
           E   E+ C C C HV+TG  I+G  H+ + L  L
Sbjct: 33  ESSDEYRCLCNCFHVKTGAFIIGCVHVLMILFFL 66


>AC006762-8|AAP31426.1|  295|Caenorhabditis elegans Hypothetical
           protein Y42G9A.3b protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 430 TAPLVGNRAICCPSSVFRSSTLLSPFY--GNWLSVLPASNPCLD 555
           T  L GN    CPS++    TLL   Y  GN L  +PAS  CLD
Sbjct: 156 TLHLGGNYIDSCPSNI-SVLTLLRVLYLGGNRLREIPASIGCLD 198


>AC006762-7|AAF60555.1|  375|Caenorhabditis elegans Hypothetical
           protein Y42G9A.3a protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 430 TAPLVGNRAICCPSSVFRSSTLLSPFY--GNWLSVLPASNPCLD 555
           T  L GN    CPS++    TLL   Y  GN L  +PAS  CLD
Sbjct: 156 TLHLGGNYIDSCPSNI-SVLTLLRVLYLGGNRLREIPASIGCLD 198


>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
           protein C11E4.6 protein.
          Length = 1170

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 294 RTGDVLPTPLSNVETRPSPYSQHASHPSDH 383
           R+ D LPT L NV TRP+     +  P D+
Sbjct: 432 RSSDTLPTRLKNVRTRPTEKQIASVLPGDN 461


>Z19152-10|CAA79545.2|  348|Caenorhabditis elegans Hypothetical
           protein B0464.8 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 316 VGSTSPVRPTLLHELTGDDSRPVHPAIEDHAQSLL 212
           V +T   RPTL  E+  DDS  + P+I     SL+
Sbjct: 11  VQTTEKARPTLDQEIKLDDSNELEPSIRSVVTSLM 45


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = +2

Query: 17  WKYSRCIFWN*LLSILQPRQC*DSIPSWEVNVAVSGYAASAYMFGLAQLFW 169
           W Y  C+F   L  ++ P     S+  W  +V  SG   + +  G     W
Sbjct: 192 WYYYNCVFQLGLGILMIPEILTSSLSGWHYSVCHSGTLYTGFFSGSVVAIW 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,369,903
Number of Sequences: 27780
Number of extensions: 322547
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)