Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00031
         (485 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   0.64 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   0.64 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   1.5  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   1.5  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   1.5  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   1.5  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   1.5  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   1.5  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   1.5  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   1.5  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   5.9  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   7.9  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   7.9  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   7.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   7.9  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 69  LNSVIKKCPVLTLTQFTLKNSRMNSEK 149
           LN  IKK P+  +  FT+   ++N  +
Sbjct: 266 LNLTIKKMPIAIVAPFTIVEPKLNKHE 292


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 69  LNSVIKKCPVLTLTQFTLKNSRMNSEK 149
           LN  IKK P+  +  FT+   ++N  +
Sbjct: 158 LNLTIKKMPIAIVAPFTIVEPKLNKHE 184


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 164 VASTHRR*GHTETQEEGCSRYCGHR*QKTAASLKKLSVNTIP 289
           +ASTH +  +T+T      +Y         AS + LS N  P
Sbjct: 81  LASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAP 122


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 164 VASTHRR*GHTETQEEGCSRYCGHR*QKTAASLKKLSVNTIP 289
           +ASTH +  +T+T      +Y         AS + LS N  P
Sbjct: 81  LASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAP 122


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 164 VASTHRR*GHTETQEEGCSRYCGHR*QKTAASLKKLSVNTIP 289
           +ASTH +  +T+T      +Y         AS + LS N  P
Sbjct: 81  LASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAP 122


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 164 VASTHRR*GHTETQEEGCSRYCGHR*QKTAASLKKLSVNTIP 289
           +ASTH +  +T+T      +Y         AS + LS N  P
Sbjct: 81  LASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAP 122


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 164 VASTHRR*GHTETQEEGCSRYCGHR*QKTAASLKKLSVNTIP 289
           +ASTH +  +T+T      +Y         AS + LS N  P
Sbjct: 81  LASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAP 122


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 164 VASTHRR*GHTETQEEGCSRYCGHR*QKTAASLKKLSVNTIP 289
           +ASTH +  +T+T      +Y         AS + LS N  P
Sbjct: 37  LASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAP 78


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 164 VASTHRR*GHTETQEEGCSRYCGHR*QKTAASLKKLSVNTIP 289
           +ASTH +  +T+T      +Y         AS + LS N  P
Sbjct: 81  LASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAP 122


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 164 VASTHRR*GHTETQEEGCSRYCGHR*QKTAASLKKLSVNTIP 289
           +ASTH +  +T+T      +Y         AS + LS N  P
Sbjct: 81  LASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAP 122


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +2

Query: 164 VASTHRR*GHTETQEEGCSRYCGHR*QKTAASLKKLSVNTIP 289
           +A TH +  +T+T      +Y         AS + LS N  P
Sbjct: 81  LAPTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAP 122


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 245 KTAASLKKLSVNT 283
           +T A++KKL VNT
Sbjct: 297 RTGANIKKLIVNT 309


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 115 NCVNVKTGHFFMTLFSYYKTRQYE 44
           +C N+ TG  F    ++   R YE
Sbjct: 391 SCSNILTGDQFYNFLNHNFDRHYE 414


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 435 PQPARTRRLEPTE 473
           PQP +T   EPT+
Sbjct: 401 PQPTQTTESEPTQ 413


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +1

Query: 169 KYASEVRAHRDARRRLFTLLRPQMTKNCSIAQKVVSEHNSW 291
           KY    +A  DA+ R  ++ + + +   +  Q   S++ SW
Sbjct: 195 KYNPFAKAFLDAKERPDSIYQREYSPTFTQQQTQYSQYGSW 235


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,224
Number of Sequences: 336
Number of extensions: 2383
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)