Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00031
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...    46   2e-06
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    27   1.1  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    25   4.6  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   4.6  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   4.6  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    25   6.1  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    25   6.1  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   6.1  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
 Frame = +3

Query: 135 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTA--ATDDKKLQ 254
           M+  KL KLQ+  RIGGKGTPRRK K    +A  A DDKK+Q
Sbjct: 1   MDPSKLAKLQAGARIGGKGTPRRKVKKPSKSAMSAADDKKVQ 42



 Score = 44.8 bits (101), Expect = 7e-06
 Identities = 21/46 (45%), Positives = 29/46 (63%)
 Frame = +1

Query: 346 PEAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIA 483
           P   +SL   T AI G  E K  +E+LPGIL+ LGP+ L  L+++A
Sbjct: 74  PTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGPESLTALRQMA 119



 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 19/36 (52%), Positives = 26/36 (72%)
 Frame = +2

Query: 242 QKTAASLKKLSVNTIPGIEEVNMIKEDGTVIHFNNP 349
           +K   +LKKL++  + GI+EVNM KEDG VI+F  P
Sbjct: 39  KKVQGALKKLNMQNLAGIQEVNMFKEDGGVINFRAP 74


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 72  NSVIKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGG-KGTPRRKKKV 215
           NSV++K         +  NSR+NS    +  S V + G  G+P  K+K+
Sbjct: 131 NSVVEKISQKNQEARSRANSRVNSRANSRANSSVSLAGMDGSPNWKRKM 179


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -3

Query: 342 LKCITVPSSLIIFTSSMPGIVFTDNFLSDAAVFCHLWPQ*REQPSSCVSVCP 187
           L  ++  ++L I+ +  PG +     +++ A+     P   EQP+ CV+ CP
Sbjct: 128 LAAVSADATLRIYEAMEPGNLTYWTLMNEIALMPSP-PSRNEQPAFCVNWCP 178


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 123 KNSRMNSEKLKKLQSQVRIGGKGTPRRKKKV 215
           K  +   +KLKK   ++++    T +RK+KV
Sbjct: 148 KEKKEKKDKLKKKSKRLKLDDSHTQKRKRKV 178


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -3

Query: 450 SELAEDTREHLCGLLILPVSGNRERVRGQRRLCFGLLKCITVPSSLIIFTSSMPGIVFTD 271
           S+   +    + G   L ++  + RVR    L F  +K + V   L  F SS+P I+  +
Sbjct: 628 SKFLRNVNTRIAGGGQLSITNEKPRVRSLY-LMFICIKTLKVIVDLREFRSSLPSILHGN 686

Query: 270 NF 265
           NF
Sbjct: 687 NF 688


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +3

Query: 114 FTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDKKLQHRS 263
           F +K S+ + +    + SQ+ IGG   P   +K+        D  +Q  S
Sbjct: 77  FAMKRSQTSVQP--SMSSQIAIGGMRNPMATRKIAGTYRDAPDNSMQQTS 124


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 357 LCFGLLKCITVPSSLIIFTSSMPGIVFTDNFLSDAAVFCHLWP 229
           LC   L  + +P++  +  S++ G+V     +   AV C + P
Sbjct: 169 LCCEALYALGIPTTQALAISNLEGVVAQRETVEPCAVVCRMAP 211


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 444 LAEDTREHLCGLLILPVSGNRERVRGQRRLCFGLLKC-ITVPSSLIIFTSSM 292
           LAE   EH+ GLLI  +  N E           +LKC + +P S+++ + ++
Sbjct: 698 LAESLLEHILGLLIETLKRNTENT-------VAILKCLLIIPLSILLKSKNL 742


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,436
Number of Sequences: 5004
Number of extensions: 37261
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)