Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00031
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    66   1e-11
U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z71264-1|CAA95828.1|  998|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 33/50 (66%), Positives = 40/50 (80%), Gaps = 3/50 (6%)
 Frame = +3

Query: 126 NSRMNSEKLKKLQSQ---VRIGGKGTPRRKKKVVHVTAATDDKKLQHRSK 266
           +S+  +E++KKLQ+Q   VRIGGKGTPRRKKKV+H TAA DDKKLQ   K
Sbjct: 2   DSKAIAERIKKLQAQQEHVRIGGKGTPRRKKKVIHKTAAADDKKLQSNLK 51



 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 28/46 (60%), Positives = 37/46 (80%)
 Frame = +1

Query: 346 PEAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIA 483
           P+ Q S+ ANTF++TG  +NKQ TEMLPGIL+QLGP+ L  LK++A
Sbjct: 79  PKVQTSVPANTFSVTGSADNKQITEMLPGILNQLGPESLTHLKKLA 124



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 29/37 (78%), Positives = 33/37 (89%)
 Frame = +2

Query: 242 QKTAASLKKLSVNTIPGIEEVNMIKEDGTVIHFNNPK 352
           +K  ++LKKLSV  IPGIEEVNMIK+DGTVIHFNNPK
Sbjct: 44  KKLQSNLKKLSVTNIPGIEEVNMIKDDGTVIHFNNPK 80


>U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical
           protein B0507.6 protein.
          Length = 857

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +3

Query: 144 EKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDD----KKLQHRSK 266
           E ++K + Q+RI GKG   R   + H T   DD    KKLQ +S+
Sbjct: 442 EDVEKSEQQIRINGKG---RLSSIQHDTEEIDDSTFKKKLQEQSE 483


>Z71264-1|CAA95828.1|  998|Caenorhabditis elegans Hypothetical
           protein K07G5.1 protein.
          Length = 998

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 245 KTAASLKKLSVNTIPGIEEVNMIKEDGTVIHFNNPKHKRR 364
           KT +SLK      +  I+ +++I E+  VIH ++  HK++
Sbjct: 63  KTTSSLKIEKSFHVLAIKAIHVISEEELVIHLDDGVHKKK 102


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 241 TKNCSIAQKVVSEHNS-WHRRGKYDQRGR 324
           TK+ SI    V+ H+S WH  G  D RGR
Sbjct: 30  TKSKSIISGDVNAHHSAWHSEGSEDTRGR 58


>Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3b protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 69  LNSVIKKCPVLTLTQFTLKNSRMNSEKLK 155
           L SVI K     +T ++ K+SR+NS KL+
Sbjct: 37  LISVIDKQQCRQITDYSAKDSRINSRKLR 65


>Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3a protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 69  LNSVIKKCPVLTLTQFTLKNSRMNSEKLK 155
           L SVI K     +T ++ K+SR+NS KL+
Sbjct: 37  LISVIDKQQCRQITDYSAKDSRINSRKLR 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,243,707
Number of Sequences: 27780
Number of extensions: 227442
Number of successful extensions: 590
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)