Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00030
         (616 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0001553357 Cluster: PREDICTED: similar to novel memb...    39   0.082
UniRef50_Q6ZT51 Cluster: CDNA FLJ44954 fis, clone BRAWH2010364; ...    36   1.0  
UniRef50_Q0UNT1 Cluster: Predicted protein; n=1; Phaeosphaeria n...    33   7.1  
UniRef50_UPI0000499862 Cluster: thioredoxin; n=1; Entamoeba hist...    32   9.4  
UniRef50_Q6BNU7 Cluster: 5'-3' exoribonuclease 2; n=3; Saccharom...    32   9.4  

>UniRef50_UPI0001553357 Cluster: PREDICTED: similar to novel member
           of the keratin associated protein 4 (Krtap4) family;
           n=1; Mus musculus|Rep: PREDICTED: similar to novel
           member of the keratin associated protein 4 (Krtap4)
           family - Mus musculus
          Length = 292

 Score = 39.1 bits (87), Expect = 0.082
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 105 CYRNSACCSRCRSFGCHXCCPSVNLCPRSHHGP 7
           CY+ S C S CRS  C  CC S + C  S++ P
Sbjct: 99  CYQPSCCRSSCRSSRCRLCCGSSSCCGSSYYRP 131


>UniRef50_Q6ZT51 Cluster: CDNA FLJ44954 fis, clone BRAWH2010364;
           n=3; Homo sapiens|Rep: CDNA FLJ44954 fis, clone
           BRAWH2010364 - Homo sapiens (Human)
          Length = 247

 Score = 35.5 bits (78), Expect = 1.0
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -2

Query: 108 CCY-RNSACCSRCRSFGCHXCCPSVNLCPRSHHGP 7
           CC+   S CCS   S  C  CC     CPR  H P
Sbjct: 161 CCFLHRSPCCSLQGSLHCSPCCSLHISCPRPSHSP 195


>UniRef50_Q0UNT1 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 205

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -2

Query: 108 CCYRNSACCSRCRSFGCHXCCPSVNLC 28
           CC  N  C S   S G   CCPS N C
Sbjct: 78  CCPSNYVCASPANSNGLIGCCPSGNTC 104


>UniRef50_UPI0000499862 Cluster: thioredoxin; n=1; Entamoeba
           histolytica HM-1:IMSS|Rep: thioredoxin - Entamoeba
           histolytica HM-1:IMSS
          Length = 103

 Score = 32.3 bits (70), Expect = 9.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 471 SPMFPTYTGRYIKCKKCKIDVDYVDILCVN*ILNLMYCFYII 346
           SP F    G+Y   K  K+DVD  + +CVN  +  M  F ++
Sbjct: 38  SPYFEELAGQYNNIKFVKVDVDQAEEICVNYKVRSMPTFVLV 79


>UniRef50_Q6BNU7 Cluster: 5'-3' exoribonuclease 2; n=3;
            Saccharomycetales|Rep: 5'-3' exoribonuclease 2 -
            Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
          Length = 1003

 Score = 32.3 bits (70), Expect = 9.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 48   NXHDNQNSYNDYNRQSFGNSXXRIPRHG 131
            N + NQNSYN+YN Q+  N+      HG
Sbjct: 928  NNYSNQNSYNNYNNQNSYNNYNNRNNHG 955


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 445,482,090
Number of Sequences: 1657284
Number of extensions: 7231634
Number of successful extensions: 17988
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17914
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)