Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00030
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           29   2.3  
SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2)                      29   4.0  

>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -2

Query: 105 CYRNSACCSRCRSFGCHXCCPSVNLC 28
           CY N  CC  CR   C  CCP    C
Sbjct: 220 CYVNLCCCVTCRCSVC-TCCPCDCTC 244


>SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 105 CYRNSACCSRCRSFGCHXCCP 43
           CY N  CC  CR   C  CCP
Sbjct: 220 CYVNLCCCVTCRCSVC-TCCP 239


>SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2)
          Length = 451

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 99  RNSACCSRCRSFGCHXCCPSVNLCPRSHH 13
           R   CC++C    C  CC  +   PR  H
Sbjct: 162 RAKVCCNQCFLSVCDLCCSLMTQIPRMRH 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,835,542
Number of Sequences: 59808
Number of extensions: 229791
Number of successful extensions: 520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)