Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00029
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q17AS2 Cluster: Putative uncharacterized protein; n=2; ...    38   0.17 
UniRef50_Q47L08 Cluster: Putative membrane transport protein pre...    36   0.70 
UniRef50_Q6CN21 Cluster: Similar to sp|P32900 Saccharomyces cere...    33   4.9  

>UniRef50_Q17AS2 Cluster: Putative uncharacterized protein; n=2;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 163

 Score = 38.3 bits (85), Expect = 0.17
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +3

Query: 288 PHGATAAIVSIFTIALIVCGLVLVVRKYNLIEYMRQKINQRRTNDVMYEDVMIGN--DDP 461
           PH     I+   +  +++   +++ +K  L++ +R  +   R     YEDV++GN  DDP
Sbjct: 101 PHHILGGILIPVSAVIVILATIVLAKKTQLMQRIRLSLFSNRPRRPAYEDVVLGNDSDDP 160

Query: 462 PL 467
           P+
Sbjct: 161 PI 162


>UniRef50_Q47L08 Cluster: Putative membrane transport protein
           precursor; n=1; Thermobifida fusca YX|Rep: Putative
           membrane transport protein precursor - Thermobifida
           fusca (strain YX)
          Length = 485

 Score = 36.3 bits (80), Expect = 0.70
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = -2

Query: 293 VRTACIITRLFTVSPTRIKPFSQTHCNVFWTQTSFFPXQGSIAVTLQGRMWSDVTYCRKF 114
           V TA + T +  + PT I  F+ TH  V W  T+     G+++  + GR+  D+ Y R+ 
Sbjct: 24  VVTAVMQTLVVPLLPTLITAFNTTHEAVSWVVTASL-IAGAVSTPVLGRL-GDM-YGRRE 80

Query: 113 KVNAAIISIVFGPIM-TLNNHITL 45
            +  A++S+V G ++  L+ HI L
Sbjct: 81  VMLGALLSLVAGSLLAALSTHIPL 104


>UniRef50_Q6CN21 Cluster: Similar to sp|P32900 Saccharomyces
           cerevisiae YHR149c; n=1; Kluyveromyces lactis|Rep:
           Similar to sp|P32900 Saccharomyces cerevisiae YHR149c -
           Kluyveromyces lactis (Yeast) (Candida sphaerica)
          Length = 688

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +3

Query: 258 CEEPSDDTGGPHGATAAIVSIFTIALIVCGLVLVVRKYNLIEYMRQKINQRRTND 422
           CE+PSD T      T A+V    + ++V GLVL+   Y +  Y R K  +   ND
Sbjct: 34  CEKPSDSTN-----TTAVVVAVVVPVVVVGLVLIFILYKV--YKRNKKEELEDND 81


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,081,843
Number of Sequences: 1657284
Number of extensions: 10434297
Number of successful extensions: 22696
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22694
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)