Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00029
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1033 - 25552157-25552732,25553050-25553505,25553608-255536...    29   2.6  
11_04_0346 + 16623134-16623583,16623923-16623979,16626872-16627024     29   3.5  
10_08_1034 + 22461397-22461702,22462311-22462524,22464936-224649...    29   3.5  
02_04_0475 + 23229046-23229480,23230062-23231205,23232187-232323...    29   3.5  
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442...    28   6.0  
05_01_0321 + 2535201-2535260,2535366-2535700,2535705-2535849,253...    28   8.0  

>12_02_1033 -
           25552157-25552732,25553050-25553505,25553608-25553659,
           25553758-25553831,25553968-25554017,25554106-25554187,
           25554265-25554314,25554405-25554447,25554544-25554624,
           25554723-25554768,25554860-25554906,25554998-25555063,
           25555334-25555400,25555528-25555613
          Length = 591

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 258 SLTNSNKTFFADTLQCLLDANLIFPLXRLHCGHITRQDVVRCNV 127
           ++  +N T+F++   C     L+  L  LH  HI  +DV   N+
Sbjct: 92  AIKRANGTYFSEEKLCKWLVQLLMALDYLHANHILHRDVKCSNI 135


>11_04_0346 + 16623134-16623583,16623923-16623979,16626872-16627024
          Length = 219

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 472 GLNGGSSLPIMTSSYITSFVLR*LIFCLIYSIKLYFLTTNTRP 344
           G+ GG    +M+   + + VL  ++FC +  +KL  LT ++ P
Sbjct: 9   GVGGGGGSKVMSPKQVLTVVL--VVFCALSFVKLLLLTGSSSP 49


>10_08_1034 +
           22461397-22461702,22462311-22462524,22464936-22464997,
           22465035-22465381,22465495-22465591
          Length = 341

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 167 AVTLQGRMWSDVTYCRKFK 111
           A+ L    WSD+T+CR+FK
Sbjct: 154 ALQLDENTWSDLTFCRRFK 172


>02_04_0475 +
           23229046-23229480,23230062-23231205,23232187-23232334,
           23232776-23234225
          Length = 1058

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 296 TVRTACIITRLFTVSPTRIKPFSQTHCNVFWTQTS 192
           T R   +  ++ TV+P ++KP S  HC   + Q++
Sbjct: 346 TTRNEEVARKICTVAPYKLKPLSDDHCWTLFRQSA 380


>09_04_0359 +
           16941904-16942110,16943636-16943785,16944084-16944293,
           16944376-16944452,16944554-16944698
          Length = 262

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +3

Query: 276 DTGGPHGATAAIVSIFTIALIVCGLVLVVRKYNLIEYMRQK 398
           DT     A A  +SI  I+LIVC +V V++ ++L +Y R+K
Sbjct: 221 DTSEKTNARATWLSI--ISLIVCIIVSVLQLWHLQQYFRKK 259


>05_01_0321 +
           2535201-2535260,2535366-2535700,2535705-2535849,
           2535946-2536140,2536243-2536530,2536849-2537035,
           2537260-2537306,2537704-2537796
          Length = 449

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 299 GTVRTACIITRLFTVSPTRIKPFSQTHCNVFWTQ 198
           G VR  C+ T L T+ P     F  TH +  W +
Sbjct: 404 GNVRYCCLTTLLLTMKPETEDGFEITHIHKTWLE 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,555,612
Number of Sequences: 37544
Number of extensions: 280085
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)