Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00029
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_10794| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_36795| Best HMM Match : Conotoxin (HMM E-Value=7.1)                 28   8.1  

>SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 142 HILPCNVTAMEPXKGKNEVCVQKTLQCVCEKGFI 243
           HI  C      P   +  VC Q T QC C++G +
Sbjct: 380 HIKVCRQCNCHPHGSRGRVCNQSTGQCPCKEGVV 413


>SB_10794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 82  NTIDIIAAFTLNFLQYVTSDHILPCNVTAMEPXKG 186
           +T D+ A F  N L Y T+D  L C+V  +E   G
Sbjct: 219 HTFDVNAKFDANNLAYTTADLPLHCDVPQLEYYPG 253


>SB_36795| Best HMM Match : Conotoxin (HMM E-Value=7.1)
          Length = 188

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 281 RRSSRCHGCYSIHIYYSINSMWSGISC 361
           R S + HGC+S++ Y    + W GISC
Sbjct: 120 RPSIQGHGCHSVYRY---TTCWHGISC 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,601,609
Number of Sequences: 59808
Number of extensions: 338850
Number of successful extensions: 758
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)