Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00029
         (687 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC007408-1|AAH07408.1|  770|Homo sapiens low density lipoprotein...    31   3.8  
AK126750-1|BAC86671.1|  644|Homo sapiens protein ( Homo sapiens ...    31   3.8  
AB009462-1|BAA32330.1|  770|Homo sapiens LDL receptor related pr...    31   3.8  

>BC007408-1|AAH07408.1|  770|Homo sapiens low density lipoprotein
           receptor-related protein 3 protein.
          Length = 770

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +3

Query: 255 DCEEPSDDTGGPHGATAAIVSIFTIALIVCGLVLVVR---KYNLIEYMRQKINQRRTNDV 425
           DC++ SD+ G        +++   I  +VCGL+LV+     + L     Q+     T   
Sbjct: 479 DCQDGSDEHGCLAAVPRKVITAALIGSLVCGLLLVIALGCAFKLYSLRTQEYRAFETQMT 538

Query: 426 MYEDVMIGNDDPP 464
             E   +  + PP
Sbjct: 539 RLEAEFVRREAPP 551


>AK126750-1|BAC86671.1|  644|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44797 fis, clone BRACE3040644, highly  similar
           to Homo sapiens low density lipoprotein receptor-related
           protein 3 (LRP3). ).
          Length = 644

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +3

Query: 255 DCEEPSDDTGGPHGATAAIVSIFTIALIVCGLVLVVR---KYNLIEYMRQKINQRRTNDV 425
           DC++ SD+ G        +++   I  +VCGL+LV+     + L     Q+     T   
Sbjct: 353 DCQDGSDEHGCLAAVPRKVITAALIGSLVCGLLLVIALGCAFKLYSLRTQEYRAFETQMT 412

Query: 426 MYEDVMIGNDDPP 464
             E   +  + PP
Sbjct: 413 RLEAEFVRREAPP 425


>AB009462-1|BAA32330.1|  770|Homo sapiens LDL receptor related
           protein 105 protein.
          Length = 770

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +3

Query: 255 DCEEPSDDTGGPHGATAAIVSIFTIALIVCGLVLVVR---KYNLIEYMRQKINQRRTNDV 425
           DC++ SD+ G        +++   I  +VCGL+LV+     + L     Q+     T   
Sbjct: 479 DCQDGSDEHGCLAAVPRKVITAALIGSLVCGLLLVIALGCAFKLYSLRTQEYRAFETQMT 538

Query: 426 MYEDVMIGNDDPP 464
             E   +  + PP
Sbjct: 539 RLEAEFVRREAPP 551


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,883,115
Number of Sequences: 237096
Number of extensions: 1635277
Number of successful extensions: 2768
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2768
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)