Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00029
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69646-8|CAA93477.3| 896|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z50794-7|CAA90661.3| 896|Caenorhabditis elegans Hypothetical pr... 31 0.58
U40415-5|AAK39251.1| 655|Caenorhabditis elegans Hypothetical pr... 30 1.8
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 4.1
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 4.1
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 4.1
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 4.1
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 5.4
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 5.4
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 5.4
Z68217-1|CAA92465.1| 461|Caenorhabditis elegans Hypothetical pr... 28 7.2
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 27 9.5
>Z69646-8|CAA93477.3| 896|Caenorhabditis elegans Hypothetical
protein F59F5.7 protein.
Length = 896
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 555 FKLQHHTSTLSSILLYNNQRLNSYQDITGLMEDRHYL 445
FK+ ++ L+SIL+Y+ +R SY +I D H L
Sbjct: 843 FKISYNVQELASILVYSKKRFVSYSEIYLPQSDMHLL 879
>Z50794-7|CAA90661.3| 896|Caenorhabditis elegans Hypothetical
protein F59F5.7 protein.
Length = 896
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 555 FKLQHHTSTLSSILLYNNQRLNSYQDITGLMEDRHYL 445
FK+ ++ L+SIL+Y+ +R SY +I D H L
Sbjct: 843 FKISYNVQELASILVYSKKRFVSYSEIYLPQSDMHLL 879
>U40415-5|AAK39251.1| 655|Caenorhabditis elegans Hypothetical
protein K02G10.5 protein.
Length = 655
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 249 W*DCEEPSDDTGGPHGATAAIVSIFTIALIVCGLVLVVRKYNLIEYMR--QKINQRRTND 422
W D + G + A + ++ I +VCG V + + LI + + + R+ ND
Sbjct: 239 WGDWRTSPAEMGIDNSADPRFIGMWWIGFVVCGFVALFTAFPLIMFPKRLKDTTVRKAND 298
Query: 423 VMYEDVMIGND 455
V D + D
Sbjct: 299 VHRTDASLDKD 309
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 279 TGGPHGATAAIVSIFTIALIVCGLVLVVRKYNLIEYMRQ 395
+ G + AA I IALIV GL+L+ ++ Y+RQ
Sbjct: 737 SSGKQSSAAASWIIAIIALIVLGLLLLATSLFILRYIRQ 775
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 279 TGGPHGATAAIVSIFTIALIVCGLVLVVRKYNLIEYMRQ 395
+ G + AA I IALIV GL+L+ ++ Y+RQ
Sbjct: 735 SSGKQSSAAASWIIAIIALIVLGLLLLATSLFILRYIRQ 773
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 279 TGGPHGATAAIVSIFTIALIVCGLVLVVRKYNLIEYMRQ 395
+ G + AA I IALIV GL+L+ ++ Y+RQ
Sbjct: 737 SSGKQSSAAASWIIAIIALIVLGLLLLATSLFILRYIRQ 775
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 279 TGGPHGATAAIVSIFTIALIVCGLVLVVRKYNLIEYMRQ 395
+ G + AA I IALIV GL+L+ ++ Y+RQ
Sbjct: 735 SSGKQSSAAASWIIAIIALIVLGLLLLATSLFILRYIRQ 773
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 154 CNVTAMEPXKGKNEVCVQKTLQCVCEKGF 240
C +P + VC Q T QC+C++GF
Sbjct: 561 CKFCNCDPMGTEGGVCDQTTGQCLCKEGF 589
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 154 CNVTAMEPXKGKNEVCVQKTLQCVCEKGF 240
C +P + VC Q T QC+C++GF
Sbjct: 561 CKFCNCDPMGTEGGVCDQTTGQCLCKEGF 589
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 154 CNVTAMEPXKGKNEVCVQKTLQCVCEKGF 240
C +P + VC Q T QC+C++GF
Sbjct: 561 CKFCNCDPMGTEGGVCDQTTGQCLCKEGF 589
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 154 CNVTAMEPXKGKNEVCVQKTLQCVCEKGF 240
C +P + VC Q T QC+C++GF
Sbjct: 561 CKFCNCDPMGTEGGVCDQTTGQCLCKEGF 589
>Z68217-1|CAA92465.1| 461|Caenorhabditis elegans Hypothetical
protein F58G6.1 protein.
Length = 461
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 264 LHSLTNSNKTFFADTLQCLLDANLIF 187
L ++ +S TFF DTLQ L +AN ++
Sbjct: 188 LPAVFDSRITFFVDTLQTLFNANSVY 213
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 184 GKNEVCVQKTLQCVCEKGFIRVGET 258
G N+VC+Q QC C G++ + ET
Sbjct: 1579 GMNQVCIQD--QCQCRSGYLVLQET 1601
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,947,961
Number of Sequences: 27780
Number of extensions: 267225
Number of successful extensions: 658
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -