Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00029
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.8  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    22   4.8  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -2

Query: 161 TLQGRMWSDVTYCRKFKVNAAIISIVFGPIMTLNNHITLNEQYVNFC 21
           T++ + + +VT      V    I     P+M +N    L EQ+ +FC
Sbjct: 481 TIEAKTYPEVTMLFSDIVGFTEICSTATPMMVINMLQNLYEQFDSFC 527


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 554 LSCSITLPHLVLFYYIITKD*IAIKILRA*WRIV 453
           L C I    LV F+Y+   D + + +L   W+++
Sbjct: 369 LVCGILGSILVPFFYVQEDDDVKLVLLNFGWQMI 402



 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 443 HDVLVHNIICSSLINLLPHIFN 378
           H+V V+NI+ +S  +L   IF+
Sbjct: 275 HNVFVNNILAASACSLFVVIFH 296


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 128 YCRKFKVNAAIISIVFGPI 72
           YC  +K +   +S+ FGP+
Sbjct: 66  YCETYKNSIYDVSMTFGPV 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,408
Number of Sequences: 438
Number of extensions: 3641
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)