Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00028
         (470 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   4.3  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   4.3  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    21   5.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 322 LDKIGNVRRTGWIAIFDFHS 381
           LDK G   +  W+A FD +S
Sbjct: 905 LDKSGRSVQLSWVAPFDGNS 924


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 66  NFDSFKFTKKISYLLYRH 13
           +FD+F+ TKK+ +L   H
Sbjct: 288 DFDTFRNTKKLQWLDTSH 305


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 257 WIPYKT*GLIIALTNVYLVVLI 322
           WI  +T   I+A    YLV+LI
Sbjct: 343 WITSETCEEIVAGVTTYLVILI 364


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,412
Number of Sequences: 336
Number of extensions: 2270
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)