Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00028
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0215 + 16505994-16506542,16506803-16507894                       29   1.4  
02_01_0292 + 1949926-1950037,1950121-1950250,1950551-1950616,195...    28   3.3  
07_01_1013 - 8593690-8595006,8595275-8595928,8595951-8596065,859...    28   4.4  
04_03_0361 + 14912420-14912720,14912945-14913117,14913474-149137...    27   5.8  
03_05_0788 + 27709563-27709832,27710101-27710887,27710947-277110...    27   5.8  

>02_03_0215 + 16505994-16506542,16506803-16507894
          Length = 546

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +1

Query: 265 VQNLRVNHC--TNKRVLSCLDLDKIGNVRRTG-WIAIFDFHSLR 387
           V+NL + +   TNK VL C+DL  +  V   G W A  DF  +R
Sbjct: 19  VRNLSIINVGETNKNVLKCVDLTHVRLVTIFGEWRASLDFRKMR 62


>02_01_0292 +
           1949926-1950037,1950121-1950250,1950551-1950616,
           1950718-1950789,1951198-1951607,1951789-1951994,
           1952121-1952407,1952527-1952665,1952746-1953141
          Length = 605

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/69 (18%), Positives = 38/69 (55%)
 Frame = -1

Query: 224 DQRGSVNEYRFICVKVVETHPIWYSTMI*QPTELNL*SFPDRFTKRNVLRKTKISTVLNL 45
           D +GS++ Y+    + ++ HP+ +   I   T  +L  + + F+++N++R+T    +   
Sbjct: 269 DTKGSISSYQKNVQESLQNHPLQFKFTI--FTVASLQQYTNSFSEQNLMRQTLFGKIYLA 326

Query: 44  QKKSLIYYI 18
           +++ + + +
Sbjct: 327 EQQDIKFAV 335


>07_01_1013 -
           8593690-8595006,8595275-8595928,8595951-8596065,
           8596560-8596861,8596884-8597369
          Length = 957

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 265 VQNLRVNHCTNKRVLSCLDLDKIGNVRRTGW 357
           VQ++  +H T + V++C D D I      GW
Sbjct: 725 VQHMCRHHITTQNVMACCDFDMIFTFLLVGW 755


>04_03_0361 +
           14912420-14912720,14912945-14913117,14913474-14913779,
           14913862-14913936,14913976-14914191,14914741-14915527,
           14915587-14915681
          Length = 650

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 265 VQNLRVNHCTNKRVLSCLDLDKIGNVRRTGW 357
           VQ++  +H T + V++C D D I      GW
Sbjct: 563 VQHICRHHITTQNVMACCDFDMIFTFVLAGW 593


>03_05_0788 +
           27709563-27709832,27710101-27710887,27710947-27711086,
           27712209-27712442,27712782-27712847
          Length = 498

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 265 VQNLRVNHCTNKRVLSCLDLDKIGNVRRTGW 357
           VQ++  +H T + V++C D D I      GW
Sbjct: 296 VQHMCRHHITTQNVMACCDFDMIFTFVLAGW 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,655,693
Number of Sequences: 37544
Number of extensions: 180016
Number of successful extensions: 253
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)