Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00028
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36468| Best HMM Match : DUF1643 (HMM E-Value=4.1)                   29   2.6  
SB_25436| Best HMM Match : 7tm_1 (HMM E-Value=9.49996e-41)             29   2.6  
SB_14555| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_57726| Best HMM Match : YiaAB (HMM E-Value=0.56)                    29   2.6  
SB_911| Best HMM Match : bZIP_1 (HMM E-Value=0.53)                     29   2.6  
SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)                 27   7.8  
SB_41368| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_36468| Best HMM Match : DUF1643 (HMM E-Value=4.1)
          Length = 471

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 185 VKVVETHPIWYSTMI*QPT 129
           +K++E  P WYSTM+ +PT
Sbjct: 313 LKLIEATPPWYSTMVPKPT 331


>SB_25436| Best HMM Match : 7tm_1 (HMM E-Value=9.49996e-41)
          Length = 321

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 369 KDRNPSCSSYIANFI*IKTTKYTFV-SAMINPQVLYGIHSGSQKK 238
           +DR      Y  ++I +KT ++T V S+ INP +LYG  S + ++
Sbjct: 251 QDRVIIIQKYDIHYIVLKTVEFTLVCSSCINP-ILYGFQSSNYRE 294


>SB_14555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 185 VKVVETHPIWYSTMI*QPT 129
           +K++E  P WYSTM+ +PT
Sbjct: 40  LKLIEATPPWYSTMVPKPT 58


>SB_57726| Best HMM Match : YiaAB (HMM E-Value=0.56)
          Length = 400

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 185 VKVVETHPIWYSTMI*QPT 129
           +K++E  P WYSTM+ +PT
Sbjct: 252 LKLIEATPPWYSTMVPKPT 270


>SB_911| Best HMM Match : bZIP_1 (HMM E-Value=0.53)
          Length = 260

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 185 VKVVETHPIWYSTMI*QPT 129
           +K++E  P WYSTM+ +PT
Sbjct: 127 LKLIEATPPWYSTMVPKPT 145


>SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -1

Query: 422 VIIDFLG----CHYCQRNE*KSKIAIHPVLLTLPILSKSR 315
           VI++F G     HY Q+N  K+   +H  +LT+P   + R
Sbjct: 708 VIVEFCGNGNLLHYLQKNSNKNYSNLHEYVLTIPARERLR 747


>SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)
          Length = 736

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -1

Query: 371 SKIAIHPVLLTLPILSKSRQLSTRLLVQ*LTLKFCTVSIQAHKKNKFNTDQRGSVNEYRF 192
           S++ I  ++  LP  S S  ++ RL     TL         H K  +NT Q   +N   +
Sbjct: 375 SRVNISRLVSCLPNTSISCNVTVRLAPHEYTLYDTGFLYIYHSKAIYNTSQYTILNGTMY 434

Query: 191 ICVKV-VETHPIW-YSTMI 141
           +C K+ ++   +W Y  M+
Sbjct: 435 VCSKIRLKKASLWAYHEMV 453


>SB_41368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 413 DFLGCHYCQRNE*KSKIAI-HPVLLTLPILSKSRQLSTRLLVQ 288
           D L  HY +  + K  + + +  LL+  IL  SRQL +RLL++
Sbjct: 93  DLLSFHYTRDEKVKFCLCLCYTKLLSFDILIPSRQLGSRLLLR 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,358,374
Number of Sequences: 59808
Number of extensions: 236121
Number of successful extensions: 393
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)