Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00028
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81147-9|CAB03538.1|  349|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U50069-4|AAB37557.1|  355|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z50756-2|CAA90638.1|  473|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z81147-9|CAB03538.1|  349|Caenorhabditis elegans Hypothetical
           protein T09E11.11 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 104 DRFTKRNVLRKTKISTVLNLQKKSLI 27
           D F++RN+LRKT +S   N   K L+
Sbjct: 175 DSFSRRNILRKTSMSNTGNKTLKKLV 200


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
           protein T01D3.7 protein.
          Length = 2882

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 375 KVKDRNPSCSSYIANFI*IKTTKYTFVSAMINPQVLYGIHSGSQKK 238
           KV  R  S  S  A  I + T++ T  + ++N    YGIH+  +K+
Sbjct: 33  KVTIRRSSSYSNKATGIYVGTSEITIENVVVNANGFYGIHAEVEKR 78


>U50069-4|AAB37557.1|  355|Caenorhabditis elegans Hypothetical
           protein C09B9.1 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 239 FFCEPEWIPYKT*GLIIALTNVYLVVLI*IKLAM*EEQDGLRSLT 373
           FFC+  + P +   L I L  V + VLI + L +  E+D +RS+T
Sbjct: 39  FFCDQYFTPKRIISLGIMLGRVAIAVLI-MLLGLKMEKDYMRSIT 82


>Z50756-2|CAA90638.1|  473|Caenorhabditis elegans Hypothetical
           protein T08D10.3 protein.
          Length = 473

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -1

Query: 329 LSKSR-QLSTRLLVQ*LTLKFCTVSIQAHKKNKFNTDQRGSVNEYRFICVKVVETHPIWY 153
           LSK+  Q S RL    L ++    S   H+  +    Q+  VN+ R +   V   HPI  
Sbjct: 171 LSKANSQTSDRLFSHILDIERAPFSFFIHETGRLRRRQQLPVNQPRVLEYIVFCPHPIHP 230

Query: 152 STMI*QPTELNL 117
           ST    PT  +L
Sbjct: 231 STRSHYPTRHHL 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,401,020
Number of Sequences: 27780
Number of extensions: 196870
Number of successful extensions: 370
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)