Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00027
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0575 - 4259145-4261148 32 0.58
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 29 3.1
02_03_0215 + 16505994-16506542,16506803-16507894 29 3.1
02_01_0292 + 1949926-1950037,1950121-1950250,1950551-1950616,195... 28 7.2
07_01_1013 - 8593690-8595006,8595275-8595928,8595951-8596065,859... 28 9.5
04_03_0361 + 14912420-14912720,14912945-14913117,14913474-149137... 28 9.5
>07_01_0575 - 4259145-4261148
Length = 667
Score = 31.9 bits (69), Expect = 0.58
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +2
Query: 467 YINTILE-LISRTNILSVYVKVDPVF*SVFFSNPSHSSNVEFPRDLRS*SELLLKVGSLQ 643
Y +L+ L S N+ +V+ +P F + P +S V RD ++ +LKV L+
Sbjct: 191 YSKVVLDALCSMLNVHNVFAARNP-----FVNGPESNSPVVIARDTVQGTKKMLKVVELE 245
Query: 644 TKVMYSRRYLSRRGI*SAKGLSLRIFSRNMNLILKYRWFLS 766
+MY Y + + G+ LR S +L L + FL+
Sbjct: 246 LAIMYDDLYTKALVLRTRIGMILRCTSHACSL-LAFALFLT 285
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +1
Query: 259 YTVQNLRVNHCTNKRV--LSCLDLDKI 333
+ VQN +V TNKRV L C+DLDK+
Sbjct: 3890 FIVQNQKVALVTNKRVILLQCVDLDKM 3916
>02_03_0215 + 16505994-16506542,16506803-16507894
Length = 546
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 265 VQNLRVNHC--TNKRVLSCLDLDKIGNVRRTG-WIAIFDFHSLR 387
V+NL + + TNK VL C+DL + V G W A DF +R
Sbjct: 19 VRNLSIINVGETNKNVLKCVDLTHVRLVTIFGEWRASLDFRKMR 62
>02_01_0292 +
1949926-1950037,1950121-1950250,1950551-1950616,
1950718-1950789,1951198-1951607,1951789-1951994,
1952121-1952407,1952527-1952665,1952746-1953141
Length = 605
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/69 (18%), Positives = 38/69 (55%)
Frame = -3
Query: 224 DQRGSVNEYRFICVKVVETHPIWYSTMI*QPTELNL*SFPDRFTKRNVLRKTKISTVLNL 45
D +GS++ Y+ + ++ HP+ + I T +L + + F+++N++R+T +
Sbjct: 269 DTKGSISSYQKNVQESLQNHPLQFKFTI--FTVASLQQYTNSFSEQNLMRQTLFGKIYLA 326
Query: 44 QKKSLIYYI 18
+++ + + +
Sbjct: 327 EQQDIKFAV 335
>07_01_1013 -
8593690-8595006,8595275-8595928,8595951-8596065,
8596560-8596861,8596884-8597369
Length = 957
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 265 VQNLRVNHCTNKRVLSCLDLDKIGNVRRTGW 357
VQ++ +H T + V++C D D I GW
Sbjct: 725 VQHMCRHHITTQNVMACCDFDMIFTFLLVGW 755
>04_03_0361 +
14912420-14912720,14912945-14913117,14913474-14913779,
14913862-14913936,14913976-14914191,14914741-14915527,
14915587-14915681
Length = 650
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 259 YTVQNLRVNHCTNKRVLSCLDLDKIGNVRRTGW 357
+ VQ++ +H T + V++C D D I GW
Sbjct: 561 HLVQHICRHHITTQNVMACCDFDMIFTFVLAGW 593
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,701,910
Number of Sequences: 37544
Number of extensions: 325237
Number of successful extensions: 532
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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