Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00027
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.7  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 2   KKH*CLYNK*EIFFVNLKLSKF 67
           K H   YNK EI + NLK+  F
Sbjct: 433 KMHQKPYNKDEIIYPNLKIESF 454


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 2   KKH*CLYNK*EIFFVNLKLSKF 67
           K H   YNK EI + NLK+  F
Sbjct: 433 KMHQKPYNKDEIIYPNLKIESF 454


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 744 NIKFIFLLKIRSDKPFAL*MPLLERYL 664
           ++   FLL +    P +L +PLL +YL
Sbjct: 285 SLHVFFLLVVEIIPPTSLVVPLLGKYL 311


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 744 NIKFIFLLKIRSDKPFAL*MPLLERYL 664
           ++   FLL +    P +L +PLL +YL
Sbjct: 285 SLHVFFLLVVEIIPPTSLVVPLLGKYL 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,493
Number of Sequences: 438
Number of extensions: 4274
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)