Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00026
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo...    62   1e-10
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    29   0.85 
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    28   1.1  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    27   3.4  
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    25   7.9  
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...    25   7.9  

>SPBC23G7.05 |sui1|psu1|translation initiation factor
           eIF1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 31/47 (65%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
 Frame = +1

Query: 112 SIQNLNTFDPFADAIKSSEDDVQD-GLVHVRIQQRNGRKTLTTVQGL 249
           +IQN NT DPFAD   + +DD Q    +H+RIQQRNGRKTLTTVQGL
Sbjct: 3   AIQNFNTVDPFAD---TGDDDAQPLNNIHIRIQQRNGRKTLTTVQGL 46



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 19/43 (44%), Positives = 32/43 (74%)
 Frame = +2

Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
           GT+V+  + GEV+QLQGDQR  + ++LT+   ++ + +K+HGF
Sbjct: 67  GTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109



 Score = 29.5 bits (63), Expect = 0.48
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 255 EYDLKKIVRACKKEFAC 305
           E+D K+I+RA KK+FAC
Sbjct: 49  EFDQKRILRALKKDFAC 65


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 310  TLHANSFLHARTIFFRSYSRKGLAP*SASYARFVAGYGRGLNHLERRP 167
            T  ANSF  + +  F+   +    P + S  +F+ G+G+G+  L  +P
Sbjct: 2795 TAGANSFYDSMSSGFKGLKKPFTDPKNNSAGKFLKGFGKGMLGLATKP 2842


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 171 VLRAFDSIGEWVECVEILDGHTIERRVSLFQR 76
           +LR   S+  W+  ++  +G T+E+RV LF+R
Sbjct: 25  LLRDPYSLKSWLRYIKTHEGSTLEKRVLLFER 56


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 290 LACPHDLLQVIFEERPCTVVSV 225
           ++CP  LL VIFE RP  ++++
Sbjct: 114 VSCPVGLLLVIFEARPEVIINI 135


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
 Frame = +2

Query: 275 RAGMQEGVRVQGTVVEH-PEYGEVL-----QLQGDQRENICQWLTKSG 400
           RAG +  V V G++VEH P + ++L     +L GD  + I   + K G
Sbjct: 388 RAGKKSDVGVDGSLVEHYPHFVDMLREALRELIGDNEKLISIGIAKDG 435


>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +1

Query: 73  VSLKQRDPTFNRMSIQNLNTFDPFAD-AIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGL 249
           V  +   P     S++ L   D     AI     D +  + H R+Q +N R T    QG+
Sbjct: 50  VEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGI 109

Query: 250 SS 255
            S
Sbjct: 110 ES 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,924
Number of Sequences: 5004
Number of extensions: 54195
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)