Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00026
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   7e-10
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)                    31   0.90 
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)             29   3.6  
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)               28   6.3  
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.4  

>SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 26/43 (60%), Positives = 34/43 (79%)
 Frame = +2

Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
           GTVV+HPEYGE +QLQGDQR +  ++L +  L K +Q+KVHGF
Sbjct: 542 GTVVDHPEYGECIQLQGDQRAHAQEFLLQIDLAKKDQIKVHGF 584



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 26/41 (63%), Positives = 30/41 (73%), Gaps = 3/41 (7%)
 Frame = +1

Query: 139 PFADAIKS---SEDDVQDGLVHVRIQQRNGRKTLTTVQGLS 252
           PF DA K    S   VQ  ++HVRIQQRNGRKTLTT+QG+S
Sbjct: 482 PFEDASKGDGESNTSVQRDVIHVRIQQRNGRKTLTTIQGIS 522



 Score = 31.1 bits (67), Expect = 0.90
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +3

Query: 255 EYDLKKIVRACKKEFAC 305
           EYD KK+V+A KK+FAC
Sbjct: 524 EYDKKKLVKAFKKQFAC 540


>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
          Length = 734

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = -2

Query: 399 PDLVSHWQIFSRWSP*SCSTSPYSGCSTTVPCTRTPSCMPARSSSGHIRGKALHRSQRLT 220
           PD+   +++ SR  P S + S  + C+T+ P +RT S + +R+SS  +   +   S  +T
Sbjct: 479 PDIQPRFKVPSR--PGSSAVSLLASCATSQPGSRTVSPLVSRASSPVLSAHSQWNSDIIT 536

Query: 219 P 217
           P
Sbjct: 537 P 537


>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
          Length = 1496

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 338  EVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF*AALLKHNMSTLNI 478
            +VL+    QR++  QW    G+V+P QL      A   +  M+ LN+
Sbjct: 1157 KVLEFVAIQRKDNNQWAIPGGMVEPGQLVTQALKAEFGEEAMAKLNV 1203


>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 78  VETKRPYVQSYVHPESQ---HIRPIRRCYQKLGGRRSRWFSPRPYPATKRA*DADYGARP 248
           VE +   V+  +  ES    +IR   RC+Q    +R+  F  RP+P T+   D     RP
Sbjct: 49  VEVREDEVKERIRAESLANVNIRWHGRCHQSNTSKRNLSFVKRPFPTTQAENDEPEPRRP 108


>SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
          Length = 896

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 285 CKKEFACKVRSWSTRSTARCCSFR 356
           C+K F C  RS++ R T+RCC  R
Sbjct: 503 CEKAFTCGHRSYNPR-TSRCCDGR 525


>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 135  ECVEILDGHTIERRVSLFQRNAAILRTQQYNC 40
            +C+E +D H ++  +  FQ     L T  Y C
Sbjct: 1181 KCIECVDPHALQFIIDAFQGQVYALSTHPYGC 1212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,323,424
Number of Sequences: 59808
Number of extensions: 438241
Number of successful extensions: 1116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)