Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00026
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58762-4|AAK39303.1| 109|Caenorhabditis elegans Hypothetical pr... 61 6e-10
Z79600-6|CAB01879.2| 529|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z68004-2|CAA91982.1| 677|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF068710-3|ABO16459.1| 189|Caenorhabditis elegans Hypothetical ... 28 7.4
Z66513-14|CAN86619.1| 418|Caenorhabditis elegans Hypothetical p... 27 9.8
Z66513-13|CAN86618.1| 426|Caenorhabditis elegans Hypothetical p... 27 9.8
AF299333-1|AAK62992.1| 371|Caenorhabditis elegans phytochelatin... 27 9.8
AF299332-1|AAK62991.1| 371|Caenorhabditis elegans phytochelatin... 27 9.8
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 27 9.8
>U58762-4|AAK39303.1| 109|Caenorhabditis elegans Hypothetical
protein T27F7.3b protein.
Length = 109
Score = 61.3 bits (142), Expect = 6e-10
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +2
Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
GT+VEHPEYGEV+QL GDQR+ + +L K G+V +VHGF
Sbjct: 67 GTIVEHPEYGEVIQLTGDQRDKVKDFLIKVGIVNESNCRVHGF 109
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Frame = +1
Query: 109 MSIQNLNTFDPFADAIKS--SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSNMT*RR 273
MSI NLN P ADA + +ED V+ G+ H+RIQQR GRKT+TTVQG+ + +R
Sbjct: 1 MSIANLNR--P-ADAFEQLETEDGVRQGVCHIRIQQRTGRKTITTVQGIGTEYDLKR 54
>Z79600-6|CAB01879.2| 529|Caenorhabditis elegans Hypothetical
protein F59C6.8 protein.
Length = 529
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 94 PTFNRMSIQNLNTFDPF-ADAIKSSEDDVQDGL-VHVRIQQRNGRKTLTTV 240
PTFNR I N FDP+ +A K + + DGL + + + R + T+ T+
Sbjct: 397 PTFNRSKISNPPFFDPYHLNATKRAIYKISDGLKIQRKFKNRVSQGTMKTI 447
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 357 P*SCSTSPYSGCSTTVPCTRTPSCMPARSSSG 262
P S +++P GC T C+ C+ RSS+G
Sbjct: 938 PGSSASAPELGCDVTRDCSEFADCVYERSSTG 969
>Z68004-2|CAA91982.1| 677|Caenorhabditis elegans Hypothetical
protein F47B10.2 protein.
Length = 677
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -1
Query: 439 LETVHLELFRLH*AGFGEPLA--NILSLVALKLQHLA 335
L+ + L L R H G+GEPLA L+AL++ LA
Sbjct: 199 LKKLQLNLIRSHATGYGEPLAPNRARMLLALRINILA 235
>AF068710-3|ABO16459.1| 189|Caenorhabditis elegans Hypothetical
protein T06A1.4 protein.
Length = 189
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +1
Query: 67 RSVSLKQRDPTFNRMSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQG 246
++V + DP F ++ Q L FD A++ DVQ ++ + R+ ++ + G
Sbjct: 83 QTVDMNCSDPGFEAIAAQYLKVFDDVITAVEEKPGDVQTACDRLQAVGKMHRQKVSGMDG 142
>Z66513-14|CAN86619.1| 418|Caenorhabditis elegans Hypothetical
protein F54D5.1b protein.
Length = 418
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 237 GARPFLEYDLKKIVRACKKEFACKVRSWS 323
G RP + Y LK V +FA V SW+
Sbjct: 224 GTRPLIMYGLKAYVNINDSDFATSVISWN 252
>Z66513-13|CAN86618.1| 426|Caenorhabditis elegans Hypothetical
protein F54D5.1a protein.
Length = 426
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 237 GARPFLEYDLKKIVRACKKEFACKVRSWS 323
G RP + Y LK V +FA V SW+
Sbjct: 232 GTRPLIMYGLKAYVNINDSDFATSVISWN 260
>AF299333-1|AAK62992.1| 371|Caenorhabditis elegans phytochelatin
synthase protein.
Length = 371
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 237 GARPFLEYDLKKIVRACKKEFACKVRSWS 323
G RP + Y LK V +FA V SW+
Sbjct: 224 GTRPLIMYGLKAYVNINDSDFATSVISWN 252
>AF299332-1|AAK62991.1| 371|Caenorhabditis elegans phytochelatin
synthase protein.
Length = 371
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 237 GARPFLEYDLKKIVRACKKEFACKVRSWS 323
G RP + Y LK V +FA V SW+
Sbjct: 224 GTRPLIMYGLKAYVNINDSDFATSVISWN 252
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 266 EEDRAGM-QEGVRVQGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVH 430
EED AG + +R+ +E+ + + QGD++ N + L + EQ+K H
Sbjct: 18 EEDTAGRYDQALRLYDQAIEYFLHAIKYESQGDKQRNAIRDKVGQYLNRAEQIKTH 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,348,139
Number of Sequences: 27780
Number of extensions: 313431
Number of successful extensions: 841
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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