Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00025
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo... 75 1e-14
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 30 0.42
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 30 0.42
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 30 0.42
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 30 0.42
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 28 1.3
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 28 1.7
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 27 3.9
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 25 9.1
>SPBC23G7.05 |sui1|psu1|translation initiation factor
eIF1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 109
Score = 74.9 bits (176), Expect = 1e-14
Identities = 31/61 (50%), Positives = 48/61 (78%)
Frame = +3
Query: 255 EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 434
E+D K+I+RA KK+FACNGT+V+ + GEV+QLQGDQR + ++LT+ ++ + +K+HG
Sbjct: 49 EFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHG 108
Query: 435 F 437
F
Sbjct: 109 F 109
Score = 61.7 bits (143), Expect = 1e-10
Identities = 31/47 (65%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Frame = +1
Query: 112 SIQNLNTFDPFADAIKSSEDDVQD-GLVHVRIQQRNGRKTLTTVQGL 249
+IQN NT DPFAD + +DD Q +H+RIQQRNGRKTLTTVQGL
Sbjct: 3 AIQNFNTVDPFAD---TGDDDAQPLNNIHIRIQQRNGRKTLTTVQGL 46
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 29.9 bits (64), Expect = 0.42
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 669 QSNEIVNIPNSLFLFLYDIVFLNCCN 746
Q E +++PN+LFL Y + F +C N
Sbjct: 75 QKEEFIDVPNTLFLGCYTMGFQSCIN 100
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 29.9 bits (64), Expect = 0.42
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 669 QSNEIVNIPNSLFLFLYDIVFLNCCN 746
Q E +++PN+LFL Y + F +C N
Sbjct: 75 QKEEFIDVPNTLFLGCYTMGFQSCIN 100
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 29.9 bits (64), Expect = 0.42
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 669 QSNEIVNIPNSLFLFLYDIVFLNCCN 746
Q E +++PN+LFL Y + F +C N
Sbjct: 75 QKEEFIDVPNTLFLGCYTMGFQSCIN 100
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 29.9 bits (64), Expect = 0.42
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 669 QSNEIVNIPNSLFLFLYDIVFLNCCN 746
Q E +++PN+LFL Y + F +C N
Sbjct: 75 QKEEFIDVPNTLFLGCYTMGFQSCIN 100
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1
Query: 171 VLRAFDSIGEWVECVEILDGHTIERRVSLFQR 76
+LR S+ W+ ++ +G T+E+RV LF+R
Sbjct: 25 LLRDPYSLKSWLRYIKTHEGSTLEKRVLLFER 56
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -3
Query: 301 ANSFLHARTIFFRSYSRKGLAP*SASYARFVAGYGRGLNHLERRP 167
ANSF + + F+ + P + S +F+ G+G+G+ L +P
Sbjct: 2798 ANSFYDSMSSGFKGLKKPFTDPKNNSAGKFLKGFGKGMLGLATKP 2842
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 290 LACPHDLLQVIFEERPCTVVSV 225
++CP LL VIFE RP ++++
Sbjct: 114 VSCPVGLLLVIFEARPEVIINI 135
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +1
Query: 73 VSLKQRDPTFNRMSIQNLNTFDPFAD-AIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGL 249
V + P S++ L D AI D + + H R+Q +N R T QG+
Sbjct: 50 VEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGI 109
Query: 250 SS 255
S
Sbjct: 110 ES 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,453
Number of Sequences: 5004
Number of extensions: 61772
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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