Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00025
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803...    85   8e-17
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942...    83   2e-16
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949...    74   1e-13
01_06_0992 - 33644712-33644726,33644769-33644822,33644915-336451...    66   4e-11
01_06_0767 + 31823659-31823734,31823859-31823979,31824078-318241...    30   2.3  
01_06_1413 + 37149038-37149295,37149392-37149603,37149687-371499...    29   5.4  
11_02_0028 + 7517196-7517206,7517256-7517312,7517423-7517503,751...    28   7.2  

>07_03_0685 -
           20679883-20679927,20680034-20680087,20680179-20680390,
           20680476-20680550,20683094-20683168,20686196-20686264,
           20686349-20686502,20686577-20686654,20689102-20689194,
           20689491-20689640,20690134-20690268,20691009-20691098,
           20691412-20691453,20691796-20692053,20692131-20692207,
           20693126-20693186,20693687-20693905,20694936-20695208,
           20695314-20695505,20695841-20696011
          Length = 840

 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 34/61 (55%), Positives = 48/61 (78%)
 Frame = +3

Query: 255 EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 434
           E+   KI++  KKEF CNGTVV+ PE G+V+QLQGDQR+N+  +L ++G+VK E +K+HG
Sbjct: 780 EFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHG 839

Query: 435 F 437
           F
Sbjct: 840 F 840



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 28/55 (50%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
 Frame = +1

Query: 109 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLTTVQGLSSNMT 264
           + IQ    FDPFA+A  + +     G    VHVRIQQRNGRK+LTTVQGL    +
Sbjct: 729 LDIQIPTAFDPFAEA-NAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFS 782


>05_05_0359 +
           24393254-24393260,24393952-24394163,24394243-24394296,
           24394400-24394444
          Length = 105

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 33/61 (54%), Positives = 47/61 (77%)
 Frame = +3

Query: 255 EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 434
           EY   KI++  KKEF CNGTVV+ PE G+V+QLQGDQR+N+  +L ++G+ K + +K+HG
Sbjct: 45  EYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHG 104

Query: 435 F 437
           F
Sbjct: 105 F 105



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 25/41 (60%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
 Frame = +1

Query: 136 DPFADAIKSSEDDVQDGL---VHVRIQQRNGRKTLTTVQGL 249
           DPFA+A  + +     G    VHVRIQQRNGRK+LTTVQGL
Sbjct: 3   DPFAEA-NAEDSGAGPGAKDYVHVRIQQRNGRKSLTTVQGL 42


>04_04_1237 -
           31991817-31992569,31993452-31993550,31994343-31994976,
           31995329-31995585
          Length = 580

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 29/61 (47%), Positives = 44/61 (72%)
 Frame = +3

Query: 255 EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 434
           EY+  K++R  K+E  CNG VVE  E G+++QLQGD R ++  +L K+G+V+ + +KVHG
Sbjct: 520 EYNYAKVLRDLKRELCCNGNVVEDKELGKIIQLQGDHRNSVSDFLAKAGMVRKDNIKVHG 579

Query: 435 F 437
           F
Sbjct: 580 F 580



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/20 (90%), Positives = 20/20 (100%)
 Frame = +1

Query: 190 VHVRIQQRNGRKTLTTVQGL 249
           VHVR+QQRNGRKTLTTVQG+
Sbjct: 498 VHVRVQQRNGRKTLTTVQGI 517


>01_06_0992 -
           33644712-33644726,33644769-33644822,33644915-33645126,
           33645436-33645472
          Length = 105

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 27/51 (52%), Positives = 37/51 (72%)
 Frame = +3

Query: 255 EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLV 407
           EY   KI++  KKEF CNGTVV+ PE G+V+QLQGDQR+N+  +L +   +
Sbjct: 55  EYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQIAFI 105



 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 28/50 (56%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
 Frame = +1

Query: 109 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLTTVQGL 249
           + +Q  + FDPFA+A  + +  V  G    VHVRIQQRNGRK+LTTVQGL
Sbjct: 4   LDVQLPSAFDPFAEA-NAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGL 52


>01_06_0767 +
           31823659-31823734,31823859-31823979,31824078-31824189,
           31824278-31824691,31824795-31824898,31825017-31825136,
           31825344-31825467,31826567-31826680,31826789-31826980,
           31827328-31827424,31827505-31827653,31828729-31829013
          Length = 635

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 392 GEPLANILSLVALKLQHLAVLRVLHDRT-VARELLLACPHDLLQVIFEE 249
           G  +  ILS    K +  ++  V  D T  A+E+LL  P +LL++IFEE
Sbjct: 101 GSEVVTILSTKG-KCERASIDEVYLDLTDAAKEMLLESPPELLELIFEE 148


>01_06_1413 +
           37149038-37149295,37149392-37149603,37149687-37149951,
           37150099-37150407
          Length = 347

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 60  VVSQRFVETKRPYVQSYVHPESQHI 134
           V +QR+V  K P+V+ + HPE  H+
Sbjct: 299 VEAQRYVAEKLPWVRYHEHPEGGHL 323


>11_02_0028 +
           7517196-7517206,7517256-7517312,7517423-7517503,
           7518009-7518108,7518454-7518507,7519045-7519115,
           7519248-7519455,7519647-7519700,7519934-7520025,
           7520090-7520285,7521158-7521339,7521429-7521496,
           7522848-7522920,7523010-7523071,7523155-7524079,
           7524843-7525133,7525601-7525871
          Length = 931

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/22 (63%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = -2

Query: 332 LRVLHD-RTVARELLLACPHDL 270
           LR+LHD + VAR++L A PHDL
Sbjct: 564 LRMLHDGKWVARKVLGAVPHDL 585


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,629,868
Number of Sequences: 37544
Number of extensions: 400769
Number of successful extensions: 1033
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)