Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00025
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   1e-18
SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)                 33   0.19 
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           30   1.8  
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_5004| Best HMM Match : AA_kinase (HMM E-Value=0)                    29   3.2  
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)             29   4.2  
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_4779| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.6  

>SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 39/61 (63%), Positives = 50/61 (81%)
 Frame = +3

Query: 255 EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 434
           EYD KK+V+A KK+FACNGTVV+HPEYGE +QLQGDQR +  ++L +  L K +Q+KVHG
Sbjct: 524 EYDKKKLVKAFKKQFACNGTVVDHPEYGECIQLQGDQRAHAQEFLLQIDLAKKDQIKVHG 583

Query: 435 F 437
           F
Sbjct: 584 F 584



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 26/41 (63%), Positives = 30/41 (73%), Gaps = 3/41 (7%)
 Frame = +1

Query: 139 PFADAIKS---SEDDVQDGLVHVRIQQRNGRKTLTTVQGLS 252
           PF DA K    S   VQ  ++HVRIQQRNGRKTLTT+QG+S
Sbjct: 482 PFEDASKGDGESNTSVQRDVIHVRIQQRNGRKTLTTIQGIS 522


>SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)
          Length = 446

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 672 SNEIVNIPNSLFLFLYDIVFLNCCNNSINKYM 767
           +N+I  IPN LF+ L D+++L+  +N +  YM
Sbjct: 69  NNKISVIPNQLFINLIDLIYLDLSDNCLGNYM 100


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -3

Query: 772  KNMYLLIELLQQFKNTMSYKNKNKLLGIFTISFD*LFCNL*DETAAIIYKIYNILYNRG 596
            +N  + +E LQ  K+  S +   K L + T+ F+ LFC    ET A++ + +N+ +  G
Sbjct: 1149 ENDLISLEYLQVSKDCPSTE---KALRMATLQFNSLFCIANQETLAVLAQFFNVAFPSG 1204


>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 23/53 (43%), Positives = 25/53 (47%)
 Frame = +1

Query: 178  QDGLVHVRIQQRNGRKTLTTVQGLSSNMT*RRSCGHARRSSRATVRSWSTRST 336
            QDG V  R   R    T  T    SSN T     GH RRSS  T RS + RS+
Sbjct: 1048 QDGQVTTRSHTRRSSNTTRTHTRRSSNTT----RGHTRRSSN-TTRSHARRSS 1095


>SB_5004| Best HMM Match : AA_kinase (HMM E-Value=0)
          Length = 835

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -2

Query: 344 HLAVLRVLHDRTVARELLL---ACPHDLLQVIFEERPCTVVSV 225
           H  + RVL    VA++L+L     P  +L VIFE RP  +V V
Sbjct: 424 HKNIGRVLRKTRVAKDLVLQQETVPIGVLMVIFESRPDALVQV 466


>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
          Length = 1496

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 339  EVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF*AALLKHNMSTLNI 479
            +VL+    QR++  QW    G+V+P QL      A   +  M+ LN+
Sbjct: 1157 KVLEFVAIQRKDNNQWAIPGGMVEPGQLVTQALKAEFGEEAMAKLNV 1203


>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 78  VETKRPYVQSYVHPESQ---HIRPIRRCYQKLGGRRSRWFSPRPYPATKRA*DADYGARP 248
           VE +   V+  +  ES    +IR   RC+Q    +R+  F  RP+P T+   D     RP
Sbjct: 49  VEVREDEVKERIRAESLANVNIRWHGRCHQSNTSKRNLSFVKRPFPTTQAENDEPEPRRP 108


>SB_4779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 231 DYGARPFLEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWL-TKSGLV 407
           +Y A P+ +   + +   C KE    G      E  E L++ G +R  IC+ L  K  +V
Sbjct: 312 EYRAAPYTKKLTEYMATPCSKELTEYGATPYSTELTEYLRVSGKRRNAICRKLEQKLNVV 371

Query: 408 K 410
           K
Sbjct: 372 K 372


>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 135  ECVEILDGHTIERRVSLFQRNAAILRTQQYNC 40
            +C+E +D H ++  +  FQ     L T  Y C
Sbjct: 1181 KCIECVDPHALQFIIDAFQGQVYALSTHPYGC 1212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,463,339
Number of Sequences: 59808
Number of extensions: 484600
Number of successful extensions: 1097
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)