Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00025
         (774 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY095068-1|AAM11396.1|  110|Drosophila melanogaster RE14985p pro...   130   2e-30
AE014296-608|AAF47744.1|  110|Drosophila melanogaster CG17737-PA...   130   2e-30
AY051517-1|AAK92941.1|  731|Drosophila melanogaster GH16956p pro...    33   0.33 
AE013599-2721|AAF57674.2|  731|Drosophila melanogaster CG30115-P...    33   0.33 
AE013599-2720|AAF57673.2| 1593|Drosophila melanogaster CG30115-P...    33   0.33 
AY118671-1|AAM50531.1| 1240|Drosophila melanogaster AT03020p pro...    33   0.44 
AY069568-1|AAL39713.1|  513|Drosophila melanogaster LD29830p pro...    31   1.8  
AF055719-1|AAC32822.3|  513|Drosophila melanogaster splicing fac...    31   1.8  
AE014134-1720|AAF52825.1|  513|Drosophila melanogaster CG4602-PA...    31   1.8  
U01182-1|AAC03566.1| 1256|Drosophila melanogaster flightless-I p...    30   4.1  
AF132184-1|AAD34772.1| 1256|Drosophila melanogaster unknown prot...    30   4.1  
AF017777-2|AAC28407.1| 1256|Drosophila melanogaster flightless p...    30   4.1  
AE014298-3118|AAF50830.2| 1256|Drosophila melanogaster CG1484-PA...    30   4.1  

>AY095068-1|AAM11396.1|  110|Drosophila melanogaster RE14985p
           protein.
          Length = 110

 Score =  130 bits (314), Expect = 2e-30
 Identities = 56/61 (91%), Positives = 59/61 (96%)
 Frame = +3

Query: 255 EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 434
           EYDLKKIVR+CKKEFACNGTV+EHPEYGEVLQLQGDQRENICQWLTK GL KP+QLKVHG
Sbjct: 50  EYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHG 109

Query: 435 F 437
           F
Sbjct: 110 F 110



 Score = 93.1 bits (221), Expect = 4e-19
 Identities = 42/49 (85%), Positives = 47/49 (95%)
 Frame = +1

Query: 109 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSS 255
           MSIQNLNT DPFADAIK ++DD+QDGLVH+RIQQRNGRKTLTTVQGLS+
Sbjct: 1   MSIQNLNTRDPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSA 49


>AE014296-608|AAF47744.1|  110|Drosophila melanogaster CG17737-PA
           protein.
          Length = 110

 Score =  130 bits (314), Expect = 2e-30
 Identities = 56/61 (91%), Positives = 59/61 (96%)
 Frame = +3

Query: 255 EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 434
           EYDLKKIVR+CKKEFACNGTV+EHPEYGEVLQLQGDQRENICQWLTK GL KP+QLKVHG
Sbjct: 50  EYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHG 109

Query: 435 F 437
           F
Sbjct: 110 F 110



 Score = 93.1 bits (221), Expect = 4e-19
 Identities = 42/49 (85%), Positives = 47/49 (95%)
 Frame = +1

Query: 109 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSS 255
           MSIQNLNT DPFADAIK ++DD+QDGLVH+RIQQRNGRKTLTTVQGLS+
Sbjct: 1   MSIQNLNTRDPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSA 49


>AY051517-1|AAK92941.1|  731|Drosophila melanogaster GH16956p
           protein.
          Length = 731

 Score = 33.5 bits (73), Expect = 0.33
 Identities = 18/83 (21%), Positives = 40/83 (48%)
 Frame = +1

Query: 67  RSVSLKQRDPTFNRMSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQG 246
           R   ++QR+  F R ++ N ++FD F ++++  E+ +        +  RN     T +Q 
Sbjct: 70  RRSEIRQRNSKFKRKTVANSSSFDSFNESLEQEEESISQAKPSKPL-ARNNSLDDTALQK 128

Query: 247 LSSNMT*RRSCGHARRSSRATVR 315
           L++ M  R+     +  ++  V+
Sbjct: 129 LAAAMRYRKRDAAVKEETKTPVK 151


>AE013599-2721|AAF57674.2|  731|Drosophila melanogaster CG30115-PC,
           isoform C protein.
          Length = 731

 Score = 33.5 bits (73), Expect = 0.33
 Identities = 18/83 (21%), Positives = 40/83 (48%)
 Frame = +1

Query: 67  RSVSLKQRDPTFNRMSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQG 246
           R   ++QR+  F R ++ N ++FD F ++++  E+ +        +  RN     T +Q 
Sbjct: 70  RRSEIRQRNSKFKRKTVANSSSFDSFNESLEQEEESISQAKPSKPL-ARNNSLDDTALQK 128

Query: 247 LSSNMT*RRSCGHARRSSRATVR 315
           L++ M  R+     +  ++  V+
Sbjct: 129 LAAAMRYRKRDAAVKEETKTPVK 151


>AE013599-2720|AAF57673.2| 1593|Drosophila melanogaster CG30115-PD,
            isoform D protein.
          Length = 1593

 Score = 33.5 bits (73), Expect = 0.33
 Identities = 18/83 (21%), Positives = 40/83 (48%)
 Frame = +1

Query: 67   RSVSLKQRDPTFNRMSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQG 246
            R   ++QR+  F R ++ N ++FD F ++++  E+ +        +  RN     T +Q 
Sbjct: 932  RRSEIRQRNSKFKRKTVANSSSFDSFNESLEQEEESISQAKPSKPL-ARNNSLDDTALQK 990

Query: 247  LSSNMT*RRSCGHARRSSRATVR 315
            L++ M  R+     +  ++  V+
Sbjct: 991  LAAAMRYRKRDAAVKEETKTPVK 1013


>AY118671-1|AAM50531.1| 1240|Drosophila melanogaster AT03020p
           protein.
          Length = 1240

 Score = 33.1 bits (72), Expect = 0.44
 Identities = 19/83 (22%), Positives = 39/83 (46%)
 Frame = +1

Query: 67  RSVSLKQRDPTFNRMSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQG 246
           R   ++QR+  F R ++ N ++FD F ++++  E+ V        +  RN     T +Q 
Sbjct: 576 RRSEIRQRNSKFKRKTVANSSSFDSFNESLEQEEESVSQAKPSKPL-ARNNSLDDTALQK 634

Query: 247 LSSNMT*RRSCGHARRSSRATVR 315
           L++ M  R+     +   +  V+
Sbjct: 635 LAAAMRYRKRDAAVKEEMKTPVK 657


>AY069568-1|AAL39713.1|  513|Drosophila melanogaster LD29830p
           protein.
          Length = 513

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 22/76 (28%), Positives = 39/76 (51%)
 Frame = +1

Query: 139 PFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSNMT*RRSCGHARRSSRATVRS 318
           P A + ++++ ++++ +  V+  Q      +  V G+ +    RRS   +R   R T RS
Sbjct: 242 PEAKSNEAAQAEIEEAMTIVKEAQSMISAAIDPVIGMLAKDKRRRSRSRSRSRDRRTSRS 301

Query: 319 WSTRSTARCCSFRATS 366
            S RST+R  S R+ S
Sbjct: 302 RSHRSTSRRRSRRSGS 317


>AF055719-1|AAC32822.3|  513|Drosophila melanogaster splicing factor
           SRp54 protein.
          Length = 513

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 22/76 (28%), Positives = 39/76 (51%)
 Frame = +1

Query: 139 PFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSNMT*RRSCGHARRSSRATVRS 318
           P A + ++++ ++++ +  V+  Q      +  V G+ +    RRS   +R   R T RS
Sbjct: 242 PEAKSNEAAQAEIEEAMTIVKEAQSMISAAIDPVIGMLAKDKRRRSRSRSRSRDRRTSRS 301

Query: 319 WSTRSTARCCSFRATS 366
            S RST+R  S R+ S
Sbjct: 302 RSHRSTSRRRSRRSGS 317


>AE014134-1720|AAF52825.1|  513|Drosophila melanogaster CG4602-PA
           protein.
          Length = 513

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 22/76 (28%), Positives = 39/76 (51%)
 Frame = +1

Query: 139 PFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSNMT*RRSCGHARRSSRATVRS 318
           P A + ++++ ++++ +  V+  Q      +  V G+ +    RRS   +R   R T RS
Sbjct: 242 PEAKSNEAAQAEIEEAMTIVKEAQSMISAAIDPVIGMLAKDKRRRSRSRSRSRDRRTSRS 301

Query: 319 WSTRSTARCCSFRATS 366
            S RST+R  S R+ S
Sbjct: 302 RSHRSTSRRRSRRSGS 317


>U01182-1|AAC03566.1| 1256|Drosophila melanogaster flightless-I
           protein.
          Length = 1256

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 663 NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSI 755
           N  +N+I +IP  LF+ L D++FL+  +N +
Sbjct: 129 NLSNNQIESIPTPLFIHLTDLLFLDLSHNRL 159


>AF132184-1|AAD34772.1| 1256|Drosophila melanogaster unknown
           protein.
          Length = 1256

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 663 NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSI 755
           N  +N+I +IP  LF+ L D++FL+  +N +
Sbjct: 129 NLSNNQIESIPTPLFIHLTDLLFLDLSHNRL 159


>AF017777-2|AAC28407.1| 1256|Drosophila melanogaster flightless
           protein.
          Length = 1256

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 663 NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSI 755
           N  +N+I +IP  LF+ L D++FL+  +N +
Sbjct: 129 NLSNNQIESIPTPLFIHLTDLLFLDLSHNRL 159


>AE014298-3118|AAF50830.2| 1256|Drosophila melanogaster CG1484-PA
           protein.
          Length = 1256

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 663 NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSI 755
           N  +N+I +IP  LF+ L D++FL+  +N +
Sbjct: 129 NLSNNQIESIPTPLFIHLTDLLFLDLSHNRL 159


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,156,410
Number of Sequences: 53049
Number of extensions: 687633
Number of successful extensions: 1718
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1718
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3581842374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)