Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00025
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical pr...    86   3e-17
Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical pr...    32   0.52 
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    29   4.9  
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    29   4.9  
Z68004-2|CAA91982.1|  677|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z46828-4|CAA86859.1|  207|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF068710-3|ABO16459.1|  189|Caenorhabditis elegans Hypothetical ...    28   8.5  

>U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical
           protein T27F7.3b protein.
          Length = 109

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 36/61 (59%), Positives = 47/61 (77%)
 Frame = +3

Query: 255 EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHG 434
           EYDLK+IV+  KK+ +CNGT+VEHPEYGEV+QL GDQR+ +  +L K G+V     +VHG
Sbjct: 49  EYDLKRIVQYLKKKHSCNGTIVEHPEYGEVIQLTGDQRDKVKDFLIKVGIVNESNCRVHG 108

Query: 435 F 437
           F
Sbjct: 109 F 109



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
 Frame = +1

Query: 109 MSIQNLNTFDPFADAIKS--SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSNMT*RR 273
           MSI NLN   P ADA +   +ED V+ G+ H+RIQQR GRKT+TTVQG+ +    +R
Sbjct: 1   MSIANLNR--P-ADAFEQLETEDGVRQGVCHIRIQQRTGRKTITTVQGIGTEYDLKR 54


>Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical
           protein F59C6.8 protein.
          Length = 529

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 94  PTFNRMSIQNLNTFDPF-ADAIKSSEDDVQDGL-VHVRIQQRNGRKTLTTV 240
           PTFNR  I N   FDP+  +A K +   + DGL +  + + R  + T+ T+
Sbjct: 397 PTFNRSKISNPPFFDPYHLNATKRAIYKISDGLKIQRKFKNRVSQGTMKTI 447


>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
           homolog protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 663 NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSIN 758
           N   N I  IPNS+   L D++FL+  NN ++
Sbjct: 132 NLSYNNIETIPNSVCANLIDLLFLDLSNNKLD 163


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
           flightless) homologprotein 1 protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 663 NNQSNEIVNIPNSLFLFLYDIVFLNCCNNSIN 758
           N   N I  IPNS+   L D++FL+  NN ++
Sbjct: 132 NLSYNNIETIPNSVCANLIDLLFLDLSNNKLD 163


>Z68004-2|CAA91982.1|  677|Caenorhabditis elegans Hypothetical
           protein F47B10.2 protein.
          Length = 677

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 440 LETVHLELFRLH*AGFGEPLA--NILSLVALKLQHLA 336
           L+ + L L R H  G+GEPLA      L+AL++  LA
Sbjct: 199 LKKLQLNLIRSHATGYGEPLAPNRARMLLALRINILA 235


>Z46828-4|CAA86859.1|  207|Caenorhabditis elegans Hypothetical
           protein R03D7.6 protein.
          Length = 207

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
 Frame = +3

Query: 201 YPATKRA*DADYGARPFLEYDLKK------IVRACKKEFACNG 311
           +PA K    A +G  PFLE D KK      I R   +EF  NG
Sbjct: 39  WPALKETCAAPFGQLPFLEVDGKKLAQSHAIARFLAREFKLNG 81


>AF068710-3|ABO16459.1|  189|Caenorhabditis elegans Hypothetical
           protein T06A1.4 protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +1

Query: 67  RSVSLKQRDPTFNRMSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQG 246
           ++V +   DP F  ++ Q L  FD    A++    DVQ     ++   +  R+ ++ + G
Sbjct: 83  QTVDMNCSDPGFEAIAAQYLKVFDDVITAVEEKPGDVQTACDRLQAVGKMHRQKVSGMDG 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,094,434
Number of Sequences: 27780
Number of extensions: 354403
Number of successful extensions: 861
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)