Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00023
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    27   3.3  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    26   5.8  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    25   7.6  
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc...    25   7.6  

>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 443 VFAQVARQQTRIHKYYSRAPISRWETSSFIETDR 544
           VF  VAR+   + +  +R PIS+ E  SFI  D+
Sbjct: 78  VFLCVARKAKLVLRIGNRDPISKLENVSFISLDQ 111


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 28  ELPSFFFLPMLIVIALRNYISFLWTC*LT 114
           +L +F F+P+++ +   N +S +WT  L+
Sbjct: 183 QLFNFTFVPLVLQVIFANAVSMVWTAYLS 211


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -2

Query: 390 IDTAAVFISQRPKRHYGSSRSLNGAFRY----HKHRSPPSANPSLATK 259
           ID     +   P++    S +L   + Y    H+HR+PPS++   AT+
Sbjct: 407 IDLINRMLEINPEKRISESEALQHPWFYTVSTHEHRTPPSSSEHEATE 454


>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
           Nse4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 422 IGRYTFLM*SKSIQRQYSYLSAPNVITDP 336
           +G  +F    ++IQR+     APNV+T P
Sbjct: 136 VGPLSFRKKERNIQRRERLQKAPNVLTQP 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,650
Number of Sequences: 5004
Number of extensions: 53648
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)