Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00023
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0245 - 27841761-27841884,27841920-27842128                       29   2.6  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    29   4.5  

>01_06_0245 - 27841761-27841884,27841920-27842128
          Length = 110

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/56 (30%), Positives = 21/56 (37%)
 Frame = -3

Query: 371 SYLSAPNVITDPPDPLTVLLGTTSTGHXXXXXXXXXXRADE*INPQTQPTEFLAGP 204
           S   +P+   DP DP  VL  +TS              A     P + P  FL GP
Sbjct: 39  SSFESPDASFDPEDPTCVLSSSTSADRISVLPLGRRCPAGGVEGPTSSPAAFLLGP 94


>09_06_0198 -
           21496692-21496991,21497111-21497258,21497341-21497578,
           21497679-21497889,21497977-21498170,21498263-21498364,
           21498525-21499879,21501193-21501494,21501600-21501750,
           21501838-21502102,21502155-21502362,21502467-21502660,
           21502749-21502850,21503481-21503680,21504010-21504846,
           21505806-21506107,21506209-21506359,21506447-21506684,
           21506764-21506971,21507078-21507271,21507322-21507462,
           21513484-21514811,21515923-21516227,21516331-21516481,
           21516570-21516807,21516881-21517088,21517197-21517366,
           21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 423 CSEPSLLCLHKSHDNRPASTS---TIAGPRSVGGRPAPS 530
           C   +LLC+ +S D+RP  +S   T+    SV   PAPS
Sbjct: 787 CIHVALLCVQESPDDRPLMSSIVFTLENGSSVALLPAPS 825


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,393,630
Number of Sequences: 37544
Number of extensions: 392897
Number of successful extensions: 1088
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)