Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00023
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family...    28   5.3  
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    28   5.3  
AC024780-3|AAF60571.2|  300|Caenorhabditis elegans Serpentine re...    28   5.3  
AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    28   5.3  
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    28   5.3  
U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 rela...    28   7.0  
AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell fac...    28   7.0  

>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
           protein 5, isoformb protein.
          Length = 1306

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 383 QRQYSYLSAPNVITDPPDPLTVLL 312
           QR + YL+ P +  DPP+P T  L
Sbjct: 50  QRGFVYLNVPKIDADPPNPSTYQL 73


>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
           protein 5, isoforma protein.
          Length = 1544

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 383 QRQYSYLSAPNVITDPPDPLTVLL 312
           QR + YL+ P +  DPP+P T  L
Sbjct: 50  QRGFVYLNVPKIDADPPNPSTYQL 73


>AC024780-3|AAF60571.2|  300|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 50 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 346 MTFGALRYE-YCRCIDLLYI-RNVYLPIVQSRAYCVCTSRTTT 468
           + F    YE Y + ID+ Y+ +NV+L I    + C+C  R +T
Sbjct: 66  LEFALAIYETYDKIIDICYLLQNVFLHIQSLSSICICFHRLST 108


>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +3

Query: 12  VPRRLRTAEFFFSTYADSDSLEK--LYQLLVDVLTHGAQTRSVANTSPSKSSASQNLPLD 185
           +P  +  A+ + S      + +   L Q +V V THG ++  V    PSK +    +P +
Sbjct: 107 IPENIERAKAYISEVVTRGTRQPGPLCQPVVHVQTHGIKSPVVDQGDPSKITIEIPIPAN 166

Query: 186 RKRDSL-RSGEKLSGLCLWVN 245
           +    + + GE++  L  W N
Sbjct: 167 KCGAIIGKGGEQMRKLRSWTN 187


>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +3

Query: 420 YCSEPSLLCL--HKSHDNRPASTSTIAGPRSVGGRPAPS*RQIARQPVHPSRGRHEND 587
           YC+ P    +  H+S  + P      A PR     P P   Q  +QP HPS  + E D
Sbjct: 182 YCNNPQPASMYGHRSVQS-PVPAFQDAPPRGYDNVPPP---QSYKQPTHPSPSQRETD 235


>U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 related
           protein 1 protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
 Frame = +3

Query: 402 KKCVPTYCSEPSLLCLHKSHDN-----RPASTSTIAG 497
           K CVP Y S PS + + KSH+       P S + I+G
Sbjct: 634 KTCVPGYPSAPSSIRITKSHEGAQLTWEPPSNTNISG 670


>AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell factor
           1 protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
 Frame = +3

Query: 402 KKCVPTYCSEPSLLCLHKSHDN-----RPASTSTIAG 497
           K CVP Y S PS + + KSH+       P S + I+G
Sbjct: 634 KTCVPGYPSAPSSIRITKSHEGAQLTWEPPSNTNISG 670


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,395,206
Number of Sequences: 27780
Number of extensions: 325451
Number of successful extensions: 881
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)