Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00023
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27860.1 68414.m03414 expressed protein contains Pfam profile...    29   2.1  
At5g02310.1 68418.m00154 eceriferum3 protein, putative similar t...    29   3.7  
At2g03730.1 68415.m00333 ACT domain-containing protein (ACR5) co...    29   3.7  
At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative ...    27   8.6  
At5g43040.1 68418.m05254 DC1 domain-containing protein contains ...    27   8.6  
At2g19450.1 68415.m02272 diacylglycerol O-acyltransferase / acyl...    27   8.6  

>At1g27860.1 68414.m03414 expressed protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 289

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 30  TAEFFFSTYADSDSLEKLYQLLVDVLTHGAQTRSVANTSPSK 155
           T+ ++ +  A   SLEK +Q+ VD   +G+   +VA   P K
Sbjct: 80  TSSYYITLLAHDPSLEKTFQVRVDEREYGSLDLTVAIARPKK 121


>At5g02310.1 68418.m00154 eceriferum3 protein, putative similar to
            eceriferum3 GI:1669655 from [Arabidopsis thaliana]
          Length = 2006

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 450  HKSHDNRPAST-STIAGPRSVGGR-PAPS*RQIARQPVHPSRGRHENDCKPV 599
            H+ H+    S  +++ GP ++ GR P    RQ +R+P   S G H  DC  V
Sbjct: 1339 HQPHEAENCSEKNSVGGPSTLQGRFPDIRSRQTSRRPDAGSDGFHPIDCDGV 1390


>At2g03730.1 68415.m00333 ACT domain-containing protein (ACR5)
           contains Pfam ACT domain PF01842
          Length = 456

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +3

Query: 30  TAEFFFSTYADSDSLEKLYQLLVDVLTHGAQTRSVANTSPSKSSASQNLPLDRKRDSLRS 209
           T E   S   D + L K+ +LL  VLT G+  R       + SSA      DRK   L  
Sbjct: 175 TDEETCSAITDPERLSKIRKLLGYVLTGGSSGRRFREPKTTVSSALNETHTDRKLHQLMF 234

Query: 210 GEK 218
            ++
Sbjct: 235 ADR 237


>At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative
           strong similarity to ubiquitin conjugating enzyme
           [Lycopersicon esculentum] GI:886679; contains Pfam
           profile PF00179: Ubiquitin-conjugating enzyme
          Length = 192

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 30  TAEFFFSTYADSDSLEKLYQLLVDVLTHGAQTRSVANTSPSKSSASQNLPLDR 188
           TA ++  T+A   SLE+  + LV++    AQ RS   +    S   +NL L++
Sbjct: 140 TARYWTETFAKKSSLEEKVKRLVEMGFGDAQVRSAIES----SGGDENLALEK 188


>At5g43040.1 68418.m05254 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 551

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +3

Query: 387 RFTLHKKCVPTYCSEPSLLCLHKSHDNR 470
           RFT+H+KCV  Y   P ++C+++ HD+R
Sbjct: 157 RFTIHRKCV--YL--PRVICINR-HDHR 179


>At2g19450.1 68415.m02272 diacylglycerol O-acyltransferase / acyl
           CoA:diacylglycerol acyltransferase (DGAT) identical to
           gi:5050913, gi:6625553
          Length = 520

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 372 ILPLYRFTLHKKCVPTYCSEPSLLCLH 452
           I PL  FT+ K  +  Y SEP ++ LH
Sbjct: 187 IFPLAAFTVEKLVLQKYISEPVVIFLH 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,428,782
Number of Sequences: 28952
Number of extensions: 300216
Number of successful extensions: 799
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)