Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00022
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal pro...   147   5e-36
U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor...    31   0.64 
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor...    31   0.64 
AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical ...    29   2.0  
U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte grow...    28   4.5  
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    27   6.0  

>AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 27 protein.
          Length = 83

 Score =  147 bits (356), Expect = 5e-36
 Identities = 63/82 (76%), Positives = 71/82 (86%)
 Frame = +3

Query: 9   MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 188
           MPLA+DLLHP P  E R HKLKRLV HPNSYFMDVKC GC+KI+TVFSHA  VVVC GC+
Sbjct: 1   MPLAVDLLHPEPQREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCN 60

Query: 189 TILCQPTGGRARLTEGCSFRRK 254
           T+LCQPT G+A+LTEGCSFR+K
Sbjct: 61  TVLCQPTRGKAKLTEGCSFRKK 82


>U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform c protein.
          Length = 605

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 39  SPASERRKHKLKRLVPHPNSYFM-DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 200
           +P  ERR  + +  +   + Y++ D +CP C    T F+   R   C  C  +LC
Sbjct: 517 TPRRERRLTESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform b protein.
          Length = 1284

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 39  SPASERRKHKLKRLVPHPNSYFM-DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 200
           +P  ERR  + +  +   + Y++ D +CP C    T F+   R   C  C  +LC
Sbjct: 517 TPRRERRLTESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


>AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.10 protein.
          Length = 189

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 30  LHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVC 176
           LH +P      H  +R VP    + MD+KCP C+K+         +V+C
Sbjct: 81  LHATPGRLHGHHS-RRSVP---VFMMDMKCPVCHKVVPSDDADIHLVMC 125


>U58751-7|AAB00658.2|  729|Caenorhabditis elegans Hepatocyte growth
           factor-regulatedtk substrate (hrs) family protein 1
           protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 120 PGCYKITTVFSHAQRVVVCAGCSTILCQPTGGR 218
           P CY+  +VFS   R   C  C  I C     R
Sbjct: 161 PECYRCRSVFSVFTRKHHCRACGQIFCDKCSSR 193


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 359 LSITNKGFFKGNLVFHYKKNNQITIVSSLIYLFIKVYCTIF 481
           +S T   +    LV   KKN  + +V S +Y  ++V+C  F
Sbjct: 55  ISYTYIKYMNVYLVTISKKNTNVILVLSALYKIVEVFCEYF 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,001,079
Number of Sequences: 27780
Number of extensions: 217764
Number of successful extensions: 465
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)