Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00022
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   5.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   5.6  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   7.4  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 146 F*SRTESGGLRWMLNDPLSTHWW 214
           F  R  +G  +W++N+     WW
Sbjct: 24  FLKRPITGDEKWVVNNIKRKRWW 46


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +1

Query: 325 VIFFKFTTMDPSEHYK*RLFQRESCLSLQKKQPNNNSK 438
           VIF     + P  H   R+ Q    +++Q  Q  NN +
Sbjct: 153 VIFPPVYEILPQHHLDSRVIQEAQNIAIQNTQGKNNQQ 190


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 170 HHSLCVTKNCCN 135
           HH + + KN CN
Sbjct: 24  HHKILIKKNKCN 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,805
Number of Sequences: 438
Number of extensions: 2460
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)