Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00021
         (562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39916| Best HMM Match : RasGAP (HMM E-Value=0)                      32   0.37 
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 29   2.0  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      29   2.6  
SB_50715| Best HMM Match : Mak16 (HMM E-Value=8.2)                     29   2.6  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               28   6.0  
SB_57966| Best HMM Match : Ectoine_synth (HMM E-Value=6.9)             27   7.9  
SB_25959| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_18797| Best HMM Match : zf-CXXC (HMM E-Value=6.7)                   27   7.9  
SB_44524| Best HMM Match : Cadherin (HMM E-Value=0)                    27   7.9  
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_39916| Best HMM Match : RasGAP (HMM E-Value=0)
          Length = 757

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
 Frame = +2

Query: 239 AGAGSQDEQKSAALRAHLGRIDGLLERRETRFLTGD-TMCCFDCELMPKVQHIRVGGKYF 415
           AG   QD +    L+  +G    LL R+E R L     +   D E + +   +      F
Sbjct: 3   AGVNLQDVRVEETLKIRIGEAKNLLSRKEPRSLRNSYCVVTLDQEEVFRTSTVEKSLSPF 62

Query: 416 ----VDFQIPTTFRALWRYMY 466
               V F++P  FR+L  Y+Y
Sbjct: 63  FGEDVHFEVPRDFRSLCFYLY 83


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 9    KTISLKVTTVDM-QKPPPDFRTNFEATHPPILIDNGLAILENEKIERHIMK 158
            +T SL   T+ + Q  P +FR      H  +L+ N + +++NEK+ + + K
Sbjct: 3896 ETFSLTDETIAIRQLTPVEFRVLHLLIHSLLLMGNAINLIDNEKLAKFLFK 3946


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 240 ASVLNTGSRLETRPPCPARIGCVPLARTS*CDVRSFRSQVSPAH 109
           A  L TGS LE R  CP+   C+P A+    D +  ++  S  H
Sbjct: 674 AKCLYTGSTLECR--CPSESDCLPAAKVCGYDGKVMKTYQSQCH 715


>SB_50715| Best HMM Match : Mak16 (HMM E-Value=8.2)
          Length = 349

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/92 (21%), Positives = 36/92 (39%)
 Frame = +2

Query: 137 DRTSHHEVRARGTQPIRAGQGGRVSNREPVFKTEAGAGSQDEQKSAALRAHLGRIDGLLE 316
           ++ +H     + T+  R  Q G  +    +   E      D Q S   +  +  + G ++
Sbjct: 101 EKNAHFSEGLKETEKKRVKQVGTQTRMTSIVPNETQLDKSDCQLSDKAKRLVESMRGDIK 160

Query: 317 RRETRFLTGDTMCCFDCELMPKVQHIRVGGKY 412
           +RET+  TG T+    CEL   +        Y
Sbjct: 161 QRETKKKTGRTVLLEMCELDQTIDSTSANSDY 192


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 264 CSSCEPAPASVLNTGSRLETRPPCPAR 184
           C+ C P P S+L+TG R +    CP R
Sbjct: 397 CTRCNP-PLSLLSTGQRAQCVRTCPFR 422


>SB_57966| Best HMM Match : Ectoine_synth (HMM E-Value=6.9)
          Length = 150

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 386 QHIRVGGKYFVDFQIPTTFRALWRYMYH 469
           QHI + G+Y  +  +PTT + L R + H
Sbjct: 81  QHIALRGEYLPEVNVPTTQQPLLRELSH 108


>SB_25959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 496 LRERVELIHVIHVPPQSTERRRYLEVHEVLPADAD-VLHLRHQLAVE 359
           +R    L +++   PQ   R+R  E+H V+ A    V + RH LA+E
Sbjct: 268 IRSDFTLENIMAHMPQGLSRKREQEIHSVVDALLKAVSYNRHMLAIE 314


>SB_18797| Best HMM Match : zf-CXXC (HMM E-Value=6.7)
          Length = 251

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 335 GTWSPCVLEVHRCVRDELVT 276
           G WS C L  + C+++EL T
Sbjct: 108 GDWSQCKLAAYTCIKNELCT 127


>SB_44524| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 630

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 466 IHV-PPQSTERRRYLEVHEVLPADADVLHLRHQLAVETAHS 347
           IH  PP       Y+++ E LP ++  LHLR +  VE  H+
Sbjct: 351 IHTSPPMFQLSEYYVKIREDLPVNSAFLHLRIKGDVEDNHA 391


>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1957

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 335  GTWSPCVLEVHRCVRDELVT 276
            G WS C L  + C+++EL T
Sbjct: 1605 GEWSQCKLAAYTCIKNELCT 1624


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,874,305
Number of Sequences: 59808
Number of extensions: 327861
Number of successful extensions: 1130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)