Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00021
(562 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY308063-1|AAQ75554.1| 290|Caenorhabditis elegans EXC-4 protein. 77 7e-15
AL132876-18|CAD21669.2| 290|Caenorhabditis elegans Hypothetical... 77 7e-15
Z81515-5|CAB04193.2| 238|Caenorhabditis elegans Hypothetical pr... 53 1e-07
AF099925-13|AAC69503.2| 287|Caenorhabditis elegans Hypothetical... 28 4.0
Z80223-7|CAB02316.2| 613|Caenorhabditis elegans Hypothetical pr... 27 7.0
U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical p... 27 9.2
U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical p... 27 9.2
DQ812088-1|ABG89384.1| 530|Caenorhabditis elegans mammalian str... 27 9.2
AC024823-2|AAF59596.3| 530|Caenorhabditis elegans Hypothetical ... 27 9.2
AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical ... 27 9.2
>AY308063-1|AAQ75554.1| 290|Caenorhabditis elegans EXC-4 protein.
Length = 290
Score = 77.4 bits (182), Expect = 7e-15
Identities = 34/73 (46%), Positives = 47/73 (64%)
Frame = +2
Query: 290 LGRIDGLLERRETRFLTGDTMCCFDCELMPKVQHIRVGGKYFVDFQIPTTFRALWRYMYH 469
L ID LL R++R+L G++M +DCELMP++ HIR+ G + F IP F LW Y+
Sbjct: 167 LSNIDQLLSERKSRYLLGNSMTEYDCELMPRLHHIRIIGLSLLGFDIPHNFTHLWAYILT 226
Query: 470 MYQLDAFTQSCPA 508
Y+ AF +SCPA
Sbjct: 227 AYRTAAFIESCPA 239
>AL132876-18|CAD21669.2| 290|Caenorhabditis elegans Hypothetical
protein Y105E8A.22 protein.
Length = 290
Score = 77.4 bits (182), Expect = 7e-15
Identities = 34/73 (46%), Positives = 47/73 (64%)
Frame = +2
Query: 290 LGRIDGLLERRETRFLTGDTMCCFDCELMPKVQHIRVGGKYFVDFQIPTTFRALWRYMYH 469
L ID LL R++R+L G++M +DCELMP++ HIR+ G + F IP F LW Y+
Sbjct: 167 LSNIDQLLSERKSRYLLGNSMTEYDCELMPRLHHIRIIGLSLLGFDIPHNFTHLWAYILT 226
Query: 470 MYQLDAFTQSCPA 508
Y+ AF +SCPA
Sbjct: 227 AYRTAAFIESCPA 239
>Z81515-5|CAB04193.2| 238|Caenorhabditis elegans Hypothetical
protein F26H11.5 protein.
Length = 238
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/83 (30%), Positives = 41/83 (49%)
Frame = +2
Query: 260 EQKSAALRAHLGRIDGLLERRETRFLTGDTMCCFDCELMPKVQHIRVGGKYFVDFQIPTT 439
E + A L R+D L +ET+FL D + DC ++ ++ IRV K +++IP
Sbjct: 120 EHRDTAFNTELLRLDKYLSEQETKFLISDDVTHIDCLVLTRLHSIRVAAKMLKNYEIPAD 179
Query: 440 FRALWRYMYHMYQLDAFTQSCPA 508
+ Y+ Y + F SCP+
Sbjct: 180 LSHVLDYLKAGYATEMFRVSCPS 202
>AF099925-13|AAC69503.2| 287|Caenorhabditis elegans Hypothetical
protein K01A2.1 protein.
Length = 287
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 54 PPDFRTNFEATHPPILIDNGLAILENEKIERHIMKS 161
P D RT F A HP + ID + L E+I + ++S
Sbjct: 147 PKDGRTLFSARHPTVTIDKRIKKLAAERIITNKIRS 182
>Z80223-7|CAB02316.2| 613|Caenorhabditis elegans Hypothetical
protein F26D10.9a protein.
Length = 613
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 99 LIDNGLAILENEKIERHIMKSVPGGHNLFVQDKEVA 206
+IDN A L+ +K + H+ K V N Q EVA
Sbjct: 349 VIDNSFANLDEKKCQPHVAKCVHDALNAAYQRHEVA 384
>U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical
protein F46F11.1b protein.
Length = 1225
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 355 LFRLRADAEGAAHPRRREVLRGLPNTDD 438
+F++ +D G HPR V+RG PN D
Sbjct: 112 VFKILSD-NGIEHPRHGYVIRGRPNEPD 138
>U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical
protein F46F11.1a protein.
Length = 1339
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 355 LFRLRADAEGAAHPRRREVLRGLPNTDD 438
+F++ +D G HPR V+RG PN D
Sbjct: 112 VFKILSD-NGIEHPRHGYVIRGRPNEPD 138
>DQ812088-1|ABG89384.1| 530|Caenorhabditis elegans mammalian
stromal interaction molecule-1 protein.
Length = 530
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 239 AGAGSQDEQKSAALRAHLGRIDGLLERRETRFLTGDTMCCFDCELMPKVQHI 394
A Q + K AL++ + +I L + R+L +++C F + + +HI
Sbjct: 344 ASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQIESLCGFPLLYLNETEHI 395
>AC024823-2|AAF59596.3| 530|Caenorhabditis elegans Hypothetical
protein Y55B1BM.1a protein.
Length = 530
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 239 AGAGSQDEQKSAALRAHLGRIDGLLERRETRFLTGDTMCCFDCELMPKVQHI 394
A Q + K AL++ + +I L + R+L +++C F + + +HI
Sbjct: 344 ASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQIESLCGFPLLYLNETEHI 395
>AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical
protein C09E7.5 protein.
Length = 496
Score = 27.1 bits (57), Expect = 9.2
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 203 RVSNREPVFKTEAGAGSQDEQKSAALRAHLGRIDGLL--ERRETRFLTGDTMCCFDCEL 373
RVS E K EA + +Q L +GR++ LL E++ TR L + + F EL
Sbjct: 193 RVSELEAQLKREADTAQKPKQADPDLLNKVGRLNDLLTSEKQNTRVLQ-EEVAKFKAEL 250
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,271,349
Number of Sequences: 27780
Number of extensions: 242505
Number of successful extensions: 814
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -