Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00020
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0923 - 24392892-24394148 32 0.53
03_06_0333 - 33204345-33204803 30 1.6
03_05_0085 - 20638769-20639150,20640054-20640286 30 2.1
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 29 2.8
08_01_0399 + 3524723-3525272,3525468-3525544,3526816-3526861,352... 29 3.7
02_05_1314 - 35661824-35661912,35662031-35662454,35662689-356627... 29 3.7
05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753... 29 4.9
02_02_0557 + 11470259-11472307 29 4.9
02_02_0552 + 11426761-11428815 29 4.9
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 28 6.5
10_08_0165 + 15356748-15356811,15357113-15357186,15357311-153573... 28 8.6
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 28 8.6
03_05_0820 + 27951971-27954236,27954746-27955008,27955169-279552... 28 8.6
03_05_0284 - 22712390-22712899,22712978-22713304,22713742-227140... 28 8.6
03_01_0193 + 1541884-1543064,1543153-1544647 28 8.6
02_01_0635 + 4765200-4766144,4766392-4767006 28 8.6
>12_02_0923 - 24392892-24394148
Length = 418
Score = 31.9 bits (69), Expect = 0.53
Identities = 25/61 (40%), Positives = 29/61 (47%)
Frame = +3
Query: 390 DGEPCHAETPLGYIPRAGALNTENLSAVDMNELFSIPKDFGCRSLTPSRSTSKRR*AKIY 569
DGEP TP IPR G + AVD N F I +D GC L P S++ A I
Sbjct: 71 DGEPIRCPTP---IPRHGVVGH---LAVD-NLAFLIHRDGGCSLLNPLSSSASAATAAIT 123
Query: 570 P 572
P
Sbjct: 124 P 124
>03_06_0333 - 33204345-33204803
Length = 152
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 253 LRCRSRDATCPRSSTSTGSVKMNRVSSSGPXSARTLGS*TGSCVAATGSPATPR 414
LR + R A PR + S + R S P +A T + AA+ SPA+PR
Sbjct: 81 LRAQHRGAR-PRWAASPPAATQRRRRHSRPAAALAFSRVTAAAAAASSSPASPR 133
>03_05_0085 - 20638769-20639150,20640054-20640286
Length = 204
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 421 SGVSAWQGSPSQRRKIQSKTREFSPXPGQRNLPCSSL 311
+G +W GS RRK+ SP P +R+L SL
Sbjct: 46 AGGGSWSGSDRWRRKVPVTAGPASPSPARRSLRLKSL 82
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -1
Query: 191 CITILPLCSAAAVASDLMEVPMNT-PXXQSRXSTTSGT--PAGRLPPSRMADIGTPS 30
C+ P +A + A+ L + T P + R S +G P R PP+R+A G PS
Sbjct: 164 CLAGRPQATAGSPAARLAARRLRTSPPPRLRTSRLAGAVAPRARRPPARLAAFGLPS 220
>08_01_0399 +
3524723-3525272,3525468-3525544,3526816-3526861,
3527121-3527235,3528252-3528306,3528432-3528557
Length = 322
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 180 NGDARSVCDESILRLQLRRLPEALASMPQPGRNMPKIFH 296
NG A +CDE+ L L PEA+++ + GR FH
Sbjct: 232 NGSAGEICDENSLDLHGGCRPEAMSAAARHGREDWSGFH 270
>02_05_1314 -
35661824-35661912,35662031-35662454,35662689-35662787,
35662886-35662995,35663263-35663516,35664080-35664098,
35664834-35665075,35665662-35666401
Length = 658
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -1
Query: 185 TILPLCSAAAVASDLMEVPMNTPXXQSRXSTTSGTPAGRLPPSRMADIGTPSEFSHSPSI 6
T LP S AA ++ +P P + R T T PP R A + + H+P +
Sbjct: 8 TPLPPPSLAAASTSSCFLPSLLPIRRRRWPTPKATATAAFPPRRPAPLSANNLPLHTPGV 67
>05_03_0030 +
7529814-7530257,7530409-7530462,7531605-7532793,
7532861-7533522
Length = 782
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 629 LKLGLVCSSSTCSIRPTFRWV 567
LKLGL+CS S+ +RP+ R V
Sbjct: 713 LKLGLLCSHSSPKVRPSMRLV 733
>02_02_0557 + 11470259-11472307
Length = 682
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 629 LKLGLVCSSSTCSIRPTFRWV 567
LKLGL+CS ++RPT R V
Sbjct: 614 LKLGLLCSHPMSNVRPTMRQV 634
>02_02_0552 + 11426761-11428815
Length = 684
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 629 LKLGLVCSSSTCSIRPTFRWV 567
LKLGL+CS ++RPT R V
Sbjct: 616 LKLGLLCSHPMSNVRPTMRQV 636
>07_01_0389 -
2915191-2915604,2915696-2915752,2915867-2915922,
2916053-2916113,2916243-2916365,2916505-2916537,
2916617-2916709,2916839-2916934,2917025-2917203,
2917344-2917530,2918051-2918184,2918311-2918518,
2918598-2918633,2918785-2919241,2919633-2919736,
2920489-2920569,2920646-2920697,2920837-2920876,
2920991-2921085,2921241-2921383,2921899-2922006,
2922120-2922221,2922302-2922348,2922425-2922554,
2923173-2923304,2923404-2923616,2923709-2923963,
2924053-2924799
Length = 1460
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Frame = -1
Query: 209 LIANGSCITILPLCSAAAVASDLMEVP-----MNTPXXQSRXSTTSGTPAGRLPPSRMAD 45
L+A C ++PL A+ S L P + R +G A P+R+
Sbjct: 49 LLAEAGCTLLVPLHQPPALPSPLSFAPRLARALAAADAALRDRLLAGLAAFAESPARLRQ 108
Query: 44 IGTPSEFSHSPSI 6
+ P+ +HSPS+
Sbjct: 109 LLLPTSAAHSPSL 121
>10_08_0165 +
15356748-15356811,15357113-15357186,15357311-15357394,
15357508-15357602,15357737-15357790,15357791-15357896,
15358236-15358277,15358585-15358674,15358788-15358984,
15359355-15359413,15360166-15362252
Length = 983
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 629 LKLGLVCSSSTCSIRPTFRWV 567
LKLGL+CS + RPT R V
Sbjct: 906 LKLGLLCSHPVAAARPTMRQV 926
>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
Length = 1041
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 461 VFRIQSTGSRYVPQWSLGVAGLPVAAT 381
+ R+ + ++ +P+W G GLPVA T
Sbjct: 1009 IIRLTAVAAKALPRWGGGREGLPVAVT 1035
>03_05_0820 +
27951971-27954236,27954746-27955008,27955169-27955288,
27957790-27957856,27958310-27958515
Length = 973
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 194 SCITILPLCSAAAVASDLMEVPMNTP 117
+C +IL LCSAAA AS N P
Sbjct: 70 TCASILRLCSAAAAASGTAAASSNLP 95
>03_05_0284 -
22712390-22712899,22712978-22713304,22713742-22714091,
22714176-22714401,22714655-22714728,22715813-22716152
Length = 608
Score = 27.9 bits (59), Expect = 8.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 554 VGEDLPNEMWDELNKL 601
VG +LP+++WD LN L
Sbjct: 544 VGNELPDDLWDNLNSL 559
>03_01_0193 + 1541884-1543064,1543153-1544647
Length = 891
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -1
Query: 629 LKLGLVCSSSTCSIRP 582
LKLGLVC+S+T S RP
Sbjct: 860 LKLGLVCTSNTPSARP 875
>02_01_0635 + 4765200-4766144,4766392-4767006
Length = 519
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 123 VHGNFHEVRSHGRRRTQW*NGDARSVCDESILRLQLRRLPEALASMPQPGRNM 281
V GN H++ + G+ + G AR + D +L L+L +P +AS R +
Sbjct: 48 VIGNLHQIMAGGQLVHRTMAGLARGLGDAPLLSLRLGEVPIVVASSADAAREI 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,329,792
Number of Sequences: 37544
Number of extensions: 444871
Number of successful extensions: 1518
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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