Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00020
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                      134   7e-32
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)                      134   7e-32
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)                       129   3e-30
SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)                       31   0.72 
SB_32195| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_40247| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)                       28   6.7  
SB_46434| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)                28   8.8  

>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score =  134 bits (324), Expect = 7e-32
 Identities = 58/85 (68%), Positives = 68/85 (80%)
 Frame = +1

Query: 1   PMIDGEWENSEGVPISAILLGGRRPAGVPLVVEXRDWXYGVFMGTSMRSEATAAAEHSGK 180
           P++D +WEN  GVPISAIL GGRRP GVPLV++  +W +GVF+ TS+ SE TAAAE  GK
Sbjct: 400 PIMDKDWENPAGVPISAILFGGRRPYGVPLVMQSFNWQHGVFLATSLSSETTAAAEFKGK 459

Query: 181 MVMHDPFAMSPFFGYNFGDYLKHWL 255
            VM DPFAM PFFGYNFG YL+HWL
Sbjct: 460 AVMRDPFAMRPFFGYNFGKYLEHWL 484



 Score =  103 bits (247), Expect = 1e-22
 Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
 Frame = +3

Query: 267 PGRNMPKIFHVNWFRKDEQGKFLWPGFGENSRVLDWILRRCDGEPCHAETPLGYIPRAGA 446
           P + +P IFHVNWFR D+   FLWPGFGENSRVL+W+ RR  GE     +P+G +P+ G+
Sbjct: 490 PKKKLPLIFHVNWFRLDKNEHFLWPGFGENSRVLEWVFRRVHGEEIADPSPVGLLPKYGS 549

Query: 447 LNTENL----SAVDMNELFSIPKDFGCRSLTPSR 536
           LN + L    +    NE+FSIPKD+    LT  R
Sbjct: 550 LNLDGLKDPVTPEAWNEMFSIPKDYWLEELTELR 583



 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +2

Query: 509 WLQESDAIEKYFKEEVGEDLPNEMWDELNKLRKNIQ 616
           WL+E   + KYF +EVG DLP  + DELN L   ++
Sbjct: 575 WLEELTELRKYFTDEVGIDLPKAIEDELNALENRLK 610


>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 549

 Score =  134 bits (324), Expect = 7e-32
 Identities = 58/85 (68%), Positives = 68/85 (80%)
 Frame = +1

Query: 1   PMIDGEWENSEGVPISAILLGGRRPAGVPLVVEXRDWXYGVFMGTSMRSEATAAAEHSGK 180
           P++D +WEN  GVPISAIL GGRRP GVPLV++  +W +GVF+ TS+ SE TAAAE  GK
Sbjct: 279 PIMDKDWENPAGVPISAILFGGRRPYGVPLVMQSFNWQHGVFLATSLSSETTAAAEFKGK 338

Query: 181 MVMHDPFAMSPFFGYNFGDYLKHWL 255
            VM DPFAM PFFGYNFG YL+HWL
Sbjct: 339 AVMRDPFAMRPFFGYNFGKYLEHWL 363



 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 44/91 (48%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
 Frame = +3

Query: 249 LASMPQPGRNMPKIFHVNWFRKDEQGKFLWPGFGENSRVLDWILRRCDGEPCHAETPLGY 428
           L+    P + +P IFHVNWFR D    FLWPGFGENSRVL+W+  R         +P+G 
Sbjct: 363 LSMEKDPKKKLPLIFHVNWFRLDNTEHFLWPGFGENSRVLEWVFNRVHNVDNADVSPVGL 422

Query: 429 IPRAGALNTENL----SAVDMNELFSIPKDF 509
           IP+ GALN E +    +   M ELFSIPK++
Sbjct: 423 IPKQGALNLEQMETPVTPEAMKELFSIPKEY 453



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 16/37 (43%), Positives = 28/37 (75%)
 Frame = +2

Query: 509 WLQESDAIEKYFKEEVGEDLPNEMWDELNKLRKNIQA 619
           WL E +++ KYF++E+G+DLP  + +EL+ L + I+A
Sbjct: 454 WLDEVESLRKYFQQEIGDDLPKAISNELDALEQRIKA 490


>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 707

 Score =  129 bits (311), Expect = 3e-30
 Identities = 55/84 (65%), Positives = 67/84 (79%)
 Frame = +1

Query: 4   MIDGEWENSEGVPISAILLGGRRPAGVPLVVEXRDWXYGVFMGTSMRSEATAAAEHSGKM 183
           ++D +WEN EGVPISAIL GGRRP GVPLV +  +W +GVF+ +S+ SE TAAAE  GK 
Sbjct: 590 IMDKDWENPEGVPISAILFGGRRPRGVPLVYKAFNWQHGVFIASSLSSETTAAAEFKGKA 649

Query: 184 VMHDPFAMSPFFGYNFGDYLKHWL 255
           +M DPFAM PFFGYN+G YL+HWL
Sbjct: 650 IMRDPFAMRPFFGYNYGRYLEHWL 673



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = +3

Query: 267 PGRNMPKIFHVNWFRKDEQGKFLWP 341
           P   +P IFHVNWFR +E+G FLWP
Sbjct: 682 PNYKLPDIFHVNWFRVNEKGHFLWP 706


>SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)
          Length = 680

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 411 ETPLGYIPRAGALNTENLSAVDMNELFSIPKDFG 512
           E P G++P   ALN   L  +D N+L  +P D G
Sbjct: 28  ELPRGFVPEVAALNITTLK-LDFNDLQRLPDDLG 60


>SB_32195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 440 RCSEYGKPKRCRHERA 487
           +CSEYG P+ C  ERA
Sbjct: 196 QCSEYGNPRECEEERA 211


>SB_40247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 115 YGVF---MGTSMRSEATAAAEHSGKMVMHDPFAMSPFFGYNF 231
           +G+F   M +SM +  T  A+ S K ++HD  + +  +G NF
Sbjct: 27  FGLFTAGMDSSMPNPMTGVADQSAKAILHDMKSRATSYGKNF 68


>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 2119

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 28  SEGVPISAILLGGRRPAGVPLV 93
           +EG PIS++  G ++P+ VPLV
Sbjct: 450 TEGYPISSLRPGNKKPSDVPLV 471


>SB_46434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +3

Query: 426 YIPRAGALNTENLSAVDMNELFSIPKDFGCRSLTPSRSTSKRR*AKIYPTKCGTN*TS*G 605
           Y+P    +   NL  V  NE+F + K     + T     S R  A +  T  G N T+  
Sbjct: 477 YVPGLSEVEVTNLDEV--NEIFQLGKQNRATAFTDMNEHSSRSHALLCATVIGVNRTTGA 534

Query: 606 RT 611
           RT
Sbjct: 535 RT 536


>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
          Length = 1008

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -1

Query: 137 EVPMNTPXXQSRXSTTSGTPAGRLPPSR-MADIGTPSEFSHSPS 9
           +VPM  P   +  S     PAG  PP+  ++  GT   F   PS
Sbjct: 769 QVPMGLPAVSAHISPGPMAPAGTPPPATPLSSDGTGPHFKSGPS 812


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,503,776
Number of Sequences: 59808
Number of extensions: 481657
Number of successful extensions: 1419
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)