Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00020
         (722 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin bi...    25   2.4  
AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    25   2.4  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          23   7.2  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    23   7.2  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   9.6  

>AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 17/70 (24%), Positives = 27/70 (38%)
 Frame = -1

Query: 212 GLIANGSCITILPLCSAAAVASDLMEVPMNTPXXQSRXSTTSGTPAGRLPPSRMADIGTP 33
           G++      T  P   A  V S    +  + P   +  S+    P G LPP  +    +P
Sbjct: 40  GVLPASKMPTSYPSLPAPIVPSPGAPIQQSRPQAVTVRSSAPMLPKGGLPPKGVPSSASP 99

Query: 32  SEFSHSPSIM 3
              S + S+M
Sbjct: 100 VYMSPASSLM 109


>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +1

Query: 250 WLRCRSRDATCPRSSTSTGSVKMNRVSSSGPXSAR 354
           WLR  S       SS+S  S   N  SSSG  S R
Sbjct: 32  WLRGNSGSPLSSISSSSRNSSSCNNSSSSGTHSDR 66


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 6   DRR*MGELGGCADIRHP 56
           +RR + ELG C  ++HP
Sbjct: 180 ERRVLKELGFCVHVKHP 196


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 275 QHAQDLPRQLVP 310
           QH QDLP QL P
Sbjct: 341 QHKQDLPEQLEP 352


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 714 IYIF*NLNTNYLHFRILIDSFNFISLV*FKAWACMFFLNLFNSSHISLGRSSPTSSLKYF 535
           +YI   L++     R L D  +  +L   K    +F +  FN   IS   + P+SS  Y 
Sbjct: 188 VYIPPQLSSEISTLRSLHDCISSFTLR-LKPSDLLFVIGDFNQPSISWSTADPSSSPAYS 246

Query: 534 SM 529
           S+
Sbjct: 247 SI 248


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,586
Number of Sequences: 2352
Number of extensions: 15556
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73597131
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)