Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00020
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   5.1  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 22  ENSEGVPISAILLGGRRPAGVPLVVEXRDWXYGVF 126
           E + GVP S  ++  ++  G PL+    DW +  +
Sbjct: 87  ERNNGVPSSLNVVTNKKGKGGPLLRPYPDWSFAKY 121


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 306 FRKDEQGKFLWPGFGE 353
           F +++ G+ LW GFG+
Sbjct: 257 FFEEKDGQVLWEGFGD 272


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 306 FRKDEQGKFLWPGFGE 353
           F +++ G+ LW GFG+
Sbjct: 257 FFEEKDGQVLWEGFGD 272


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 55  GWRISAHPPSSP 20
           GW +  HPP SP
Sbjct: 263 GWDVLPHPPYSP 274


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 31  EGVPISAILLGGRRPAGVPLVVEXRDWXYGVFMGTS 138
           +GVP +  ++ G+   G  L+    DW +  F   S
Sbjct: 85  DGVPSTLNVISGKTGKGGRLLKPYPDWSFAEFKDCS 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,082
Number of Sequences: 438
Number of extensions: 4340
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)