Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00020
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38210.1 68418.m04606 serine/threonine protein kinase family ...    33   0.25 
At5g29090.1 68418.m03619 hypothetical protein                          33   0.25 
At5g38250.1 68418.m04611 serine/threonine protein kinase, putati...    29   2.4  
At4g02410.1 68417.m00326 lectin protein kinase family protein co...    29   2.4  
At3g55550.1 68416.m06168 lectin protein kinase, putative similar...    29   2.4  
At5g28500.1 68418.m03469 expressed protein predicted proteins, A...    28   5.5  
At3g06840.1 68416.m00811 expressed protein                             28   7.2  
At3g46280.1 68416.m05009 protein kinase-related contains similar...    27   9.5  
At1g11800.1 68414.m01354 endonuclease/exonuclease/phosphatase fa...    27   9.5  

>At5g38210.1 68418.m04606 serine/threonine protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 686

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 327 KFLWPGFGENSRVLDWILRRCDGEPCHAETPLGYIPRAGALNTENLSAV 473
           KF+ P  G  S   D +     G   +   P+GY P  GALN  NL +V
Sbjct: 149 KFICPNKGVGSIHQDDLYHNHCGGIFNITVPIGYAPEEGALNVTNLESV 197


>At5g29090.1 68418.m03619 hypothetical protein 
          Length = 195

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 336 WPGFGENSRVLDWILRRCDGEPCHA--ETPLGYIPRAG 443
           W G+  N RVLD +  RCDG+  H   E+  G I R G
Sbjct: 54  WSGWASNVRVLDGVAGRCDGQNGHVLNESIGGPIGRGG 91


>At5g38250.1 68418.m04611 serine/threonine protein kinase, putative
           similar to receptor serine/threonine kinase PR55K
           gi|1235680|gb|AAC49208; contains protein kinase domain,
           Pfam:PF00069; contains serine/threonine protein kinase
           domain, INTERPRO:IPR002290
          Length = 579

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +3

Query: 264 QPGRNMPKIFHVNWFRKDEQGKFLWPGFGENSRVLDWILRRCDGEPCHAETPLGYIPRAG 443
           QP RN+  +F++   R+   G F  P  G  S V +   R+   +      P  Y+P   
Sbjct: 128 QPYRNLT-VFYMCDPRRHFFGNFTCPVKGLGSVVQNSTYRKLCDKSFSVTVPTSYVPEEE 186

Query: 444 ALNTENLSAV 473
           ALN  +L +V
Sbjct: 187 ALNLTHLESV 196


>At4g02410.1 68417.m00326 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain,
           PF00139: Legume lectins beta domain and PF00138: Legume
           lectins alpha domain
          Length = 674

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -1

Query: 629 LKLGLVCSSSTCSIRPTFRWV 567
           LKLGL+CS S   +RPT R V
Sbjct: 602 LKLGLLCSHSDPQVRPTMRQV 622


>At3g55550.1 68416.m06168 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 684

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -1

Query: 629 LKLGLVCSSSTCSIRPTFRWVDLRL 555
           +KLGL+CS+++  +RPT R V + L
Sbjct: 593 IKLGLLCSNNSPEVRPTMRQVVMYL 617


>At5g28500.1 68418.m03469 expressed protein predicted proteins,
           Arabidopsis thaliana and Synechocystis sp.
          Length = 434

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 212 GLIANGSCITILPLCSAAAVASDLMEVPM 126
           G +A  S + +LP+C A      L+E PM
Sbjct: 281 GEVAGASSVVVLPVCKAEEGEEKLLEAPM 309


>At3g06840.1 68416.m00811 expressed protein
          Length = 187

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 125 NTPXXQSRXSTTSGTPAGRLPPSRMADIGTP 33
           NTP   +    +SG  AG L P+R  D+  P
Sbjct: 131 NTPYRTTTSKPSSGPIAGTLTPARKGDVAIP 161


>At3g46280.1 68416.m05009 protein kinase-related contains similarity
           to light repressible receptor protein kinase
           [Arabidopsis thaliana] gi|1321686|emb|CAA66376
          Length = 471

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 181 MVMHDPFAMSP--FFGYNFGDYLKHWLRCRSRDATCPRSSTSTGSVKMNRVSSSGP 342
           +++HD  A        Y    Y + WL   S+D+T    +TS  S+ +   S+  P
Sbjct: 187 LILHDRIAYGAKELISYPLDPYGRVWLALGSQDSTLTDLTTSAPSIDITGASNKPP 242


>At1g11800.1 68414.m01354 endonuclease/exonuclease/phosphatase
           family protein contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 441

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -3

Query: 621 WACMF--FLNLFNSSHISL-GRSSPTSSLKYFSMASDSCSQS 505
           WAC    FLN + +S   + G  SPTSSL  F   +DS  +S
Sbjct: 66  WACKACTFLNTYKNSICDVCGTRSPTSSLLGFQDLTDSGLES 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,620,946
Number of Sequences: 28952
Number of extensions: 327418
Number of successful extensions: 1142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)