Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00019
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    27   2.3  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    26   4.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   4.1  
SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr...    25   7.2  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   9.5  

>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 349 EKYKQLELFLFFFCTNNSLWFSIH 420
           E Y+ +  F+F+  +N ++WF +H
Sbjct: 183 ETYQWVGFFIFWLLSNIAIWFPVH 206


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 411 KPQTIVSTEEK*KQFQLFVLFKSQNHEVLQNFNDTIFR 298
           K  TI   E + K++ L  ++KS N  +    N T+FR
Sbjct: 82  KCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFR 119


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +2

Query: 41   FSPSTTSR*NPKWIRINARKQIRIHKMIPR*SVKSRIV 154
            ++PS  S+   +  RI  +KQ+ +++ I R +++ RIV
Sbjct: 1526 WNPSIDSQAMDRAHRIGQQKQVTVYRFITRGTIEERIV 1563


>SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -2

Query: 381 K*KQFQLFVLFKSQNHEVLQNFNDTIFR*LNYQHSIPNPKSQISDTRFSP 232
           K KQF L  +F +     L NF   +F  ++  H    P++QIS  +++P
Sbjct: 61  KNKQFPL--IFVTNFITSLPNFQFPLFFFVSLLHLYRRPRNQISTRKYTP 108


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 358 KQLELFLFFFCTN-NSLWFSIHNYV 429
           K++   L   CT+ N  WF +H Y+
Sbjct: 358 KEMAWLLLIVCTDSNESWFPVHAYI 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,092,607
Number of Sequences: 5004
Number of extensions: 35527
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)