Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00018
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44965| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_25462| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                29   2.5  
SB_25450| Best HMM Match : 7tm_1 (HMM E-Value=0.088)                   29   3.3  
SB_46192| Best HMM Match : ubiquitin (HMM E-Value=0.12)                29   4.3  
SB_41817| Best HMM Match : DUF773 (HMM E-Value=0.6)                    28   7.6  

>SB_44965| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1114

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 185 IYDLSCKCPGYTSILHYVELG-LARYWLLTLSNTHCN 292
           + D  C C GYTS ++ + +G ++ Y L T  +  C+
Sbjct: 730 LVDDDCNCDGYTSSIYTISIGAISSYGLSTYYDEQCS 766


>SB_25462| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 446

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 185 IYDLSCKCPGYTSILHYVELG-LARYWLLTLSNTHCN 292
           + D  C C GYTS ++ + +G ++ Y L T  +  C+
Sbjct: 325 LVDDDCNCDGYTSSIYTISIGAISSYGLSTYYDEQCS 361


>SB_25450| Best HMM Match : 7tm_1 (HMM E-Value=0.088)
          Length = 163

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 95  RRTIDLNYENKKRANSLKWIAVNGILFAIFIYDLSCKCPGYTSILHYV 238
           R+ I  NY +    N  K  +++ +   +FI+DL      Y  I HYV
Sbjct: 107 RKAIQFNYSSSSVQNISKQSSLHIVGALVFIFDLCFLVSVYEGISHYV 154


>SB_46192| Best HMM Match : ubiquitin (HMM E-Value=0.12)
          Length = 533

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 315 RCSSSWQQLQCVLDKVSSQYLARPNS 238
           R SSS+  L   +DKVSS Y  RP S
Sbjct: 401 RSSSSFSSLSVEVDKVSSSYPIRPTS 426


>SB_41817| Best HMM Match : DUF773 (HMM E-Value=0.6)
          Length = 653

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 44  CLTSIIEMSLSPNSSLVRRTID-LNYENKKRANSLKWIAVNGILFAIFIY 190
           C+T+I+    +  +S+     D LNY+NKK    L  +A   I   I  Y
Sbjct: 181 CMTAILRRITAHKTSVTNIAFDALNYKNKKNKTVLHILAKKNISINILRY 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,215,932
Number of Sequences: 59808
Number of extensions: 344291
Number of successful extensions: 776
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)