Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00017
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         33   0.035
SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||...    27   3.0  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    25   7.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.3  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.3  

>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 33.1 bits (72), Expect = 0.035
 Identities = 23/64 (35%), Positives = 32/64 (50%)
 Frame = +2

Query: 92  RRRTMRTFNDVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGDLLIVARKLAAQQAWTRQ 271
           R +    F ++ P  P HVLVIP++ +P+L    D     L DL    RK+  QQ   + 
Sbjct: 19  RTKLSAAFVNLKPILPGHVLVIPQRAVPRLK---DLTPSELTDLFTSVRKV--QQVIEKV 73

Query: 272 ASAS 283
            SAS
Sbjct: 74  FSAS 77



 Score = 29.1 bits (62), Expect = 0.57
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 286 VNDGKNGAQSVYHLHIHILGGRQMQWPPG*FIIYSNLRISSQKLA 420
           + DG +  Q+V H+H+HI+  ++  +     ++YS L  +   LA
Sbjct: 83  IQDGVDAGQTVPHVHVHIIPRKKADFSEN-DLVYSELEKNEGNLA 126


>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 197

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/69 (20%), Positives = 37/69 (53%)
 Frame = +3

Query: 339 PRRKADAVATWLIYYL*QFENFIAKISSLRN*QSLVEIAKQFNISKSVLHRHVIRIIQSG 518
           PR K ++ A  L +   + + +++K    +   +++ + ++ + +K VLH+ +  ++  G
Sbjct: 106 PRTKWESGAVTLSFP--ELDTYLSKYQDPKQADTIMRVQQELDETKDVLHKTIESVLARG 163

Query: 519 LELFMEVQR 545
            +L   +QR
Sbjct: 164 EKLDDLIQR 172


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +3

Query: 234 PVNLLPSRPGQDRLPPRC*RWKEWRPKR 317
           PV  L  RP  D       RWK WR  R
Sbjct: 345 PVFSLDVRPAVDSFESVALRWKHWRAMR 372


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 423  LRN*QSLVEIAKQFNISKSVLHRHV 497
            LRN     E+   FNISKSV  ++V
Sbjct: 1314 LRNSSEKEEVCSVFNISKSVCSKYV 1338


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 10  NSHKLPHQAVIQSLGKYYVKKSLQ 81
           N H  PH  V+ +L   YV K LQ
Sbjct: 306 NKHTKPHLLVMDALSNLYVWKILQ 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,763
Number of Sequences: 5004
Number of extensions: 51958
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)