Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00017
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 47 1e-05
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743... 44 1e-04
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 31 0.59
01_02_0111 - 11220179-11220322,11220430-11220497,11220611-112206... 29 3.1
03_05_0495 - 24907659-24908747 29 4.1
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 29 4.1
11_06_0596 + 25385744-25388890 28 5.5
10_08_0301 - 16619499-16619675,16619770-16619853,16619932-166200... 28 7.2
10_04_0002 - 7372425-7372601,7372697-7372780,7372859-7373010,737... 28 7.2
01_04_0122 - 16329370-16329478,16329636-16329639,16329872-163299... 28 7.2
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Frame = +2
Query: 113 FNDVNPQAPTHVLVIP--RKPIPQLSLADDTDEQLLGDLLIVARKLAAQQ 256
F D+NPQAPTH+++IP + + LS A++ ++LG LL VA+ +A Q+
Sbjct: 218 FRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVEILGYLLYVAKVVAKQE 267
Score = 31.1 bits (67), Expect = 0.78
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +3
Query: 36 GDTIFGKILRKEIPANFIYEDEQ 104
G +F KI++KEIP+ +++DE+
Sbjct: 192 GSQVFDKIIKKEIPSTVVFDDEK 214
>06_03_1059 +
27273267-27273316,27274077-27274163,27274245-27274392,
27274615-27274732,27274798-27274859
Length = 154
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +3
Query: 15 AQTAAPGGDTIFGKILRKEIPANFIYEDEQ 104
A TA GG TIF KI+ KEIP+N +YEDE+
Sbjct: 36 AATADTGGPTIFDKIIAKEIPSNVVYEDEK 65
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +2
Query: 113 FNDVNPQAPTHVLVIP--RKPIPQLSLADDTDEQLLGDLLIVARKLAAQQ 256
F D+NPQAP HVLVIP R + L A+ ++LG LL A+ +A ++
Sbjct: 69 FRDINPQAPVHVLVIPKIRDGLTGLDKAEPRHVEILGYLLYAAKIVAEKE 118
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 31.5 bits (68), Expect = 0.59
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 274 FRLVVNDGKNGAQSVYHLHIHILGGRQ 354
F ++VN+GK Q ++H H+H++ R+
Sbjct: 150 FNVLVNNGKVAGQVIFHTHVHLIPRRK 176
>01_02_0111 -
11220179-11220322,11220430-11220497,11220611-11220644,
11220735-11220766,11220900-11220959,11221276-11221729
Length = 263
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 95 RRTMRTFNDVNPQAPTHVLVIPR 163
R + T D +P+APTHV ++PR
Sbjct: 27 RGELGTTGDTSPRAPTHVALLPR 49
>03_05_0495 - 24907659-24908747
Length = 362
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +2
Query: 152 VIPRKPIPQLSLADDTDEQLLGDLLIVARKLAAQQAWTRQASASLLTMERMAPKAFTTFT 331
++P K +P + AD++D+ L I++ + T ++AS R APK F
Sbjct: 32 LLPPKTLPAIPDADESDDLALFRRAILSSSSPSSATPTPSSAASYFFRRRPAPK--VAFL 89
Query: 332 FISSEE 349
F+++ +
Sbjct: 90 FLTNSD 95
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 58 YYVKKSLQISFTKTNNAYVQ*CEPTSSYSCIGDTKEAYSTAL 183
Y +KK LQ K + Y P +SYS + D +E S ++
Sbjct: 163 YPIKKDLQCETDKLTHVYTFILRPDASYSILVDNRERESGSM 204
>11_06_0596 + 25385744-25388890
Length = 1048
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 638 LKESDGGHFKGKTELLFLFNAEHFHIYLPFK 546
LKE +GK LLFL NA++ I+ P +
Sbjct: 314 LKEKIKNSLRGKRLLLFLTNADYLDIWFPIE 344
>10_08_0301 -
16619499-16619675,16619770-16619853,16619932-16620083,
16620296-16620391,16620473-16620627,16620791-16620856,
16620993-16621062,16621175-16621305,16622121-16622307,
16622410-16622485
Length = 397
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -1
Query: 311 WAPFFPSLTTRRKPVLSRPAGQQVYGQQLEDLLTTVHQYHQPARAVE*ASLVSPIHE 141
W P+F + +P L G+ YG++L L V A SL+ IHE
Sbjct: 300 WNPYFDNTEKTIEPWLLHDFGEDFYGEELR--LVIVGYIRPEANFPSLESLIERIHE 354
>10_04_0002 -
7372425-7372601,7372697-7372780,7372859-7373010,
7373229-7373324,7373406-7373554,7373723-7373788,
7373925-7373994,7374106-7374236,7376464-7376471,
7377946-7378002
Length = 329
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -1
Query: 311 WAPFFPSLTTRRKPVLSRPAGQQVYGQQLEDLLTTVHQYHQPARAVE*ASLVSPIHE 141
W P+F + +P L G+ YG++L L V A SL+ IHE
Sbjct: 232 WNPYFDNTEKTIEPWLLHDFGEDFYGEELR--LVIVGYIRPEANFPSLESLIERIHE 286
>01_04_0122 -
16329370-16329478,16329636-16329639,16329872-16329965,
16330409-16330478,16330815-16330960
Length = 140
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 387 IDNKLARWPLHLPSSEDMNVKVVNALGAILSIVNNEAEACLV 262
++N+LA W +H+ + +N K A+G ++ +V A +V
Sbjct: 62 LENRLAIWHIHVTNLGSLNPKAFVAMGWLVLVVTWAAMGVMV 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,038,965
Number of Sequences: 37544
Number of extensions: 334746
Number of successful extensions: 830
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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