Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00017
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56490.1 68416.m06282 zinc-binding protein, putative / protei...    69   4e-12
At1g31160.1 68414.m03812 zinc-binding protein, putative / protei...    65   3e-11
At4g16566.1 68417.m02507 histidine triad family protein / HIT fa...    33   0.12 
At5g58240.2 68418.m07291 bis(5'-adenosyl)-triphosphatase, putati...    31   0.49 
At5g58240.1 68418.m07292 bis(5'-adenosyl)-triphosphatase, putati...    31   0.49 
At5g48545.1 68418.m06002 histidine triad family protein / HIT fa...    31   0.65 
At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to simi...    31   0.86 

>At3g56490.1 68416.m06282 zinc-binding protein, putative / protein
           kinase C inhibitor, putative similar to 14 kDa
           zinc-binding protein (Protein kinase C inhibitor, PKCI)
           [Zea mays] Swiss-Prot:P42856
          Length = 147

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 24/34 (70%), Positives = 30/34 (88%)
 Frame = +1

Query: 271 GFRLVVNDGKNGAQSVYHLHIHILGGRQMQWPPG 372
           GFR+V+NDG  G QSVYH+H+H++GGRQM WPPG
Sbjct: 114 GFRIVINDGPQGCQSVYHIHVHLIGGRQMNWPPG 147



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +2

Query: 113 FNDVNPQAPTHVLVIP--RKPIPQLSLADDTDEQLLGDLLIVARKLAAQQ 256
           F D+ PQ P H+L+IP  R  +  LS A++    +LG LL  A+ +A Q+
Sbjct: 60  FRDITPQGPVHILLIPKVRDGLTGLSKAEERHIDILGRLLYTAKLVAKQE 109



 Score = 31.9 bits (69), Expect = 0.37
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 3   EVKLAQTAAPGGD-TIFGKILRKEIPANFIYEDEQ 104
           E + A  A P    TIF KI+ KEIP+  ++ED++
Sbjct: 22  EKEAALAATPSDSPTIFDKIISKEIPSTVVFEDDK 56


>At1g31160.1 68414.m03812 zinc-binding protein, putative / protein
           kinase C inhibitor, putative similar to 14 kDa
           zinc-binding protein (Protein kinase C inhibitor, PKCI)
           [Zea mays] Swiss-Prot:P42856
          Length = 187

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 24/34 (70%), Positives = 30/34 (88%)
 Frame = +1

Query: 271 GFRLVVNDGKNGAQSVYHLHIHILGGRQMQWPPG 372
           GFR+V+N+G    QSVYHLH+H+LGGRQM+WPPG
Sbjct: 154 GFRVVINNGVEACQSVYHLHLHVLGGRQMKWPPG 187



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = +2

Query: 113 FNDVNPQAPTHVLVIP--RKPIPQLSLADDTDEQLLGDLLIVARKLAAQQ 256
           F D+NPQAP HVLVIP  R  +  L  A+    ++LG LL  ++ +A ++
Sbjct: 100 FRDINPQAPVHVLVIPKLRDGLTSLGKAEPRHVEVLGQLLHASKIVAEKE 149



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +3

Query: 15  AQTAAPGGDTIFGKILRKEIPANFIYEDE 101
           A  A  G  TIF KI+ KEIP++ +YEDE
Sbjct: 67  ASVADTGAPTIFDKIIAKEIPSDIVYEDE 95


>At4g16566.1 68417.m02507 histidine triad family protein / HIT
           family protein contains Pfam domain, PF01230: HIT family
           (histidine triad protein family)
          Length = 146

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +2

Query: 68  RNPCKFHLRRRTMRT--FNDVNPQAPTHVLVIPRKPIPQLS--LADDTDEQLLGDLLIVA 235
           RNP    L     +   F D+ P A  H LVIP++ IP ++     D D  L+  +L V 
Sbjct: 15  RNPTTTRLLHTDEKVIAFQDIKPAAQRHYLVIPKEHIPTVNDLQRRDEDYSLVRHMLSVG 74

Query: 236 RKLAAQQA 259
           ++L  + A
Sbjct: 75  QQLLQKDA 82


>At5g58240.2 68418.m07291 bis(5'-adenosyl)-triphosphatase, putative
           similar to bis(5'-adenosyl)-triphosphatase (Diadenosine
           5',5'''- P1,P3-triphosphate hydrolase,
           Dinucleosidetriphosphatase, AP3A hydrolase, AP3AASE,
           Fragile histidine triad protein) [Homo sapiens]
           Swiss-Prot:P49789
          Length = 160

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +2

Query: 119 DVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGDLLIVARKLAAQQAWTRQASASLLTME 298
           ++ P  P HVLV PR+ +P+ +   D       DL + A+K+ ++      AS+  L ++
Sbjct: 32  NLRPLLPAHVLVCPRRLVPRFT---DLTADETSDLWLTAQKVGSKLETFHNASSLTLAIQ 88



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 280 LVVNDGKNGAQSVYHLHIHIL 342
           L + DG    Q+V H+HIHIL
Sbjct: 85  LAIQDGPQAGQTVPHVHIHIL 105


>At5g58240.1 68418.m07292 bis(5'-adenosyl)-triphosphatase, putative
           similar to bis(5'-adenosyl)-triphosphatase (Diadenosine
           5',5'''- P1,P3-triphosphate hydrolase,
           Dinucleosidetriphosphatase, AP3A hydrolase, AP3AASE,
           Fragile histidine triad protein) [Homo sapiens]
           Swiss-Prot:P49789
          Length = 180

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +2

Query: 119 DVNPQAPTHVLVIPRKPIPQLSLADDTDEQLLGDLLIVARKLAAQQAWTRQASASLLTME 298
           ++ P  P HVLV PR+ +P+ +   D       DL + A+K+ ++      AS+  L ++
Sbjct: 52  NLRPLLPAHVLVCPRRLVPRFT---DLTADETSDLWLTAQKVGSKLETFHNASSLTLAIQ 108



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 280 LVVNDGKNGAQSVYHLHIHIL 342
           L + DG    Q+V H+HIHIL
Sbjct: 105 LAIQDGPQAGQTVPHVHIHIL 125


>At5g48545.1 68418.m06002 histidine triad family protein / HIT
           family protein contains Pfam profile PF01230:HIT domain;
           contains Prosite motif PS00892: HIT family signature.
          Length = 197

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 274 FRLVVNDGKNGAQSVYHLHIHIL 342
           F L+VN+G    Q ++H HIHI+
Sbjct: 127 FNLLVNNGAAAGQVIFHTHIHII 149


>At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to similar
           to SP|O04153 Calreticulin 3 precursor {Arabidopsis
           thaliana}
          Length = 424

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 58  YYVKKSLQISFTKTNNAYVQ*CEPTSSYSCIGDTKE 165
           Y +KK LQ    K N+ Y     P +SYS + D KE
Sbjct: 164 YPIKKDLQCETDKLNHFYTFILRPDASYSVLVDNKE 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,737,976
Number of Sequences: 28952
Number of extensions: 269319
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)