Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00016
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative     66   1e-11
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)...    66   1e-11
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)...    66   1e-11
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)...    66   2e-11
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)...    66   2e-11
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)       65   2e-11
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co...    38   0.004
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid...    28   4.2  
At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI, chlor...    27   5.5  
At2g31160.1 68415.m03804 expressed protein contains Pfam profile...    27   9.7  
At1g29120.2 68414.m03565 expressed protein                             27   9.7  
At1g29120.1 68414.m03564 expressed protein                             27   9.7  

>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
          Length = 111

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 30/55 (54%), Positives = 39/55 (70%)
 Frame = +3

Query: 87  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINV 251
           +S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK  E  N+
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNI 55


>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 29/56 (51%), Positives = 41/56 (73%)
 Frame = +3

Query: 84  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINV 251
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E  NV
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNV 56


>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 29/56 (51%), Positives = 41/56 (73%)
 Frame = +3

Query: 84  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINV 251
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E  NV
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNV 56


>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 29/56 (51%), Positives = 40/56 (71%)
 Frame = +3

Query: 84  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINV 251
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNV 56


>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 29/56 (51%), Positives = 40/56 (71%)
 Frame = +3

Query: 84  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINV 251
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNV 56


>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 113

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 29/56 (51%), Positives = 40/56 (71%)
 Frame = +3

Query: 84  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINV 251
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNV 56


>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
           contains weak similarity to Swiss-Prot:52855 60S acidic
           ribosomal protein P1 (L12) [Zea mays]
          Length = 46

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 20/45 (44%), Positives = 30/45 (66%)
 Frame = +3

Query: 87  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 221
           ++  ELAC Y+AL+L D    VT   +ST++K A +++E YWP L
Sbjct: 1   MATGELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39


>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
           Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
          Length = 324

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 235 KALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 128
           +  +N P  + S  TAA  KM +I SP+T +S   R
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317


>At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI,
           chloroplast, putative / Mg-protoporphyrin IX chelatase,
           putative similar to SP|P161127 from Arabidopsis
           thaliana, SP|P93162 from Glycine max, SP|O22436 from
           Nicotiana tabacum; non-consensus AA donor splice site at
           exon 1, TG acceptor splice site at exon 2
          Length = 418

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 81  KMVSKAELACVYSALILVDDDVAVTGEKIS---TILKAAAVDVEPYWPGLFAKALEGI 245
           K+    EL+ + + + +VD  +  T +++     I KA    V+ + PGL AKA  GI
Sbjct: 158 KVQKGEELSVIETKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 215


>At2g31160.1 68415.m03804 expressed protein contains Pfam profile
           PF04852: Protein of unknown function (DUF640)
          Length = 219

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -1

Query: 271 DVGDQVRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE 116
           D+  + R +   K    RP    STS+++A    + F  +  TSS+T+++ E
Sbjct: 167 DMQSKARGVSYEKKKRKRPLPSSSTSSSSAVASHQQFQMLPGTSSTTQLKFE 218


>At1g29120.2 68414.m03565 expressed protein
          Length = 455

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 63  LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 206
           LA S   + S+  +A +YSA +    DVAV+    S +L+     +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223


>At1g29120.1 68414.m03564 expressed protein
          Length = 455

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 63  LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 206
           LA S   + S+  +A +YSA +    DVAV+    S +L+     +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,123,883
Number of Sequences: 28952
Number of extensions: 165964
Number of successful extensions: 417
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)