Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00015
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    32   0.051
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    31   0.089
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    25   7.7  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   7.7  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   7.7  

>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 32.3 bits (70), Expect = 0.051
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 81  RIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPMEQVPSL 206
           ++ L LKE+    + +      GEQ C E+ A+NP  +VP+L
Sbjct: 17  KVVLALKELNLSYEQIFYDFQKGEQKCKEHLALNPNGRVPTL 58


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 31.5 bits (68), Expect = 0.089
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +3

Query: 72  WRVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPMEQVPSLCIDGH 221
           W+V  AL   ++ Y+ + V+  K   EQ   E+ A+NP  +VP+L ID H
Sbjct: 16  WKVVQALKELDLTYETRYVNFSKN--EQKSPEHLALNPNGRVPTL-IDHH 62


>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -1

Query: 244 MFNDSIRVCPSMHKDGTCSIGLTALYSLQCCSPPPLIR 131
           ++ND     P +   G C +G+ +      C PP ++R
Sbjct: 208 VYNDLQGKIPLILDGGACGVGVESTVVNGLCDPPVILR 245


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 424 HKGLQSYRKVAIDHCRQILC 483
           +K L+ Y+K    HC ++LC
Sbjct: 99  YKMLEKYKKCDFGHCPRVLC 118


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 450 FSIALKPLVTQCWDHSFFVSSPT*ISTIRFCNGCIPEAIISQISRTFA 307
           F IA+   +     HSF V++   I  I      IPE++I+ +S T A
Sbjct: 290 FCIAIILAIIVMAAHSFHVTNEVSIYAISLGISIIPESLIAVLSITMA 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,143
Number of Sequences: 5004
Number of extensions: 46675
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)