Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00015
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0046 + 7711536-7711568,7711685-7711850,7712251-7712339,771... 74 9e-14
12_01_0675 + 5759641-5759722,5760247-5760291,5760690-5760775,576... 66 1e-11
02_04_0267 - 21430370-21430474,21430559-21430618,21430937-214310... 61 7e-10
12_01_0674 + 5755523-5755613,5756325-5756366,5756830-5756915,575... 50 1e-06
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 35 0.039
01_05_0336 - 21111048-21111800 31 0.85
07_03_0759 - 21299502-21299807,21299889-21300039,21300151-213003... 30 1.1
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 30 1.1
07_01_0489 + 3694562-3695269 30 1.5
03_01_0249 - 1935355-1935827,1936129-1936330 30 1.5
01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319 30 1.5
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 29 2.0
01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110 29 2.6
10_08_0724 + 20114796-20115506 29 3.4
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 29 3.4
10_08_0725 + 20126821-20127528 28 4.5
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 28 4.5
04_04_1142 + 31194801-31194952,31195548-31196037,31196463-311965... 27 7.9
01_06_0342 - 28562233-28562610,28562688-28563023 27 7.9
01_02_0049 + 10641363-10641563,10641640-10641750,10641893-106421... 27 7.9
>11_02_0046 +
7711536-7711568,7711685-7711850,7712251-7712339,
7712443-7712514,7712807-7712860,7713000-7713075,
7713238-7713299,7713445-7713504,7713663-7713773
Length = 240
Score = 73.7 bits (173), Expect = 9e-14
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Frame = +2
Query: 254 LEETRPQRPLMPQDCFKRAKVREICEMIASGIQPLQNLIVLIYVGE----ETKKEWSQHW 421
LE+T PQ PL+PQD +A +I ++ S IQPLQN VL ++ E + K W Q+
Sbjct: 98 LEDTYPQHPLLPQDPKMKALNIQIASIVGSSIQPLQNNSVLDFIEEKLDSQEKVNWIQYH 157
Query: 422 VTRGFRAIEKLLSTTAGKYCVGDEITLAD 508
+ RGF A+EK+L Y GDEI L D
Sbjct: 158 LNRGFTALEKMLKGCTTTYATGDEIQLGD 186
Score = 50.8 bits (116), Expect = 7e-07
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 SCSWRVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPMEQVPSLCIDGH--TLIES 236
SCS+RVRIAL+LK + Y+ K ++L+ EQ E+ +NPM+ VP+L +DG +++S
Sbjct: 35 SCSYRVRIALSLKGLDYEYKPINLL--ANEQSHPEFEKLNPMKYVPAL-VDGDDTVVVDS 91
Query: 237 LNIMHY 254
I+ Y
Sbjct: 92 FAILLY 97
>12_01_0675 +
5759641-5759722,5760247-5760291,5760690-5760775,
5760888-5760959,5761210-5761263,5761385-5761460,
5761778-5761839,5762174-5762233,5762331-5762432
Length = 212
Score = 66.5 bits (155), Expect = 1e-11
Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Frame = +2
Query: 254 LEETRPQRPLMPQDCFKRAKVREICEMIASGIQPLQNLIVL-IYVGEETKKEWSQ---HW 421
LE+ PQ L+P+D K+A +I ++ S IQPLQ V+ ++ G+ + E Q H+
Sbjct: 73 LEDKYPQHALLPKDLKKKALNLQIANIVCSSIQPLQGYAVIGLHEGKLSPDESLQIVQHY 132
Query: 422 VTRGFRAIEKLLSTTAGKYCVGDEITLAD 508
+ +GF+AIEKLL + KY GDE+ L D
Sbjct: 133 IDKGFKAIEKLLEGSNFKYATGDEVQLGD 161
Score = 40.7 bits (91), Expect = 8e-04
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +3
Query: 63 SCSWRVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPMEQVPSLCIDGHTLI-ESL 239
SCS R+RI LNLK + Y+ K+V+ + +Y +NP++ +P+L +DG ++ +SL
Sbjct: 15 SCSHRIRIVLNLKGVDYEYKSVN------PRTDPDYEKINPIKYIPAL-VDGDLVVSDSL 67
Query: 240 NIMHY 254
I Y
Sbjct: 68 AIALY 72
>02_04_0267 -
21430370-21430474,21430559-21430618,21430937-21431046,
21431220-21431295,21431541-21431594,21431935-21432006,
21432088-21432173,21432694-21432750,21432886-21432991
Length = 241
Score = 60.9 bits (141), Expect = 7e-10
Identities = 40/105 (38%), Positives = 52/105 (49%), Gaps = 20/105 (19%)
Frame = +2
Query: 254 LEETRPQRPLMPQDCFKRAKVREICEMIASGIQPLQNLIVLIY----VGEETKKEWSQHW 421
LE+ P+ PL+PQD +A +I ++ SGIQPL NL VL + VG W+Q
Sbjct: 85 LEDKYPEHPLLPQDLKMKALNLQIASIVCSGIQPLHNLTVLRFIEKKVGTGESIPWTQQQ 144
Query: 422 VTRGFR----------------AIEKLLSTTAGKYCVGDEITLAD 508
+ RGF A E L+ AGKY GDE+ LAD
Sbjct: 145 IDRGFADLLLCHTMLTSFPNGVAAENLVKGCAGKYATGDEVRLAD 189
Score = 56.4 bits (130), Expect = 1e-08
Identities = 31/56 (55%), Positives = 40/56 (71%)
Frame = +3
Query: 63 SCSWRVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPMEQVPSLCIDGHTLI 230
SCS RVRIALNLK + Y+ KAV+L+K GE E+ VNPM+ VP+L +DG +I
Sbjct: 23 SCSHRVRIALNLKGLEYEYKAVNLLK--GEHSDPEFMKVNPMKFVPAL-VDGDAVI 75
>12_01_0674 +
5755523-5755613,5756325-5756366,5756830-5756915,
5757008-5757079,5757450-5757525,5757765-5757826,
5758119-5758178,5758293-5758394
Length = 196
Score = 50.4 bits (115), Expect = 1e-06
Identities = 32/85 (37%), Positives = 43/85 (50%)
Frame = +2
Query: 254 LEETRPQRPLMPQDCFKRAKVREICEMIASGIQPLQNLIVLIYVGEETKKEWSQHWVTRG 433
LE+ PQ PL+PQD K+A + +A G + ++ QH+ +G
Sbjct: 75 LEDKYPQHPLLPQDLKKKALNMQ---GLADGKMSANESLQIV-----------QHYTDKG 120
Query: 434 FRAIEKLLSTTAGKYCVGDEITLAD 508
FRAIEKLL KY GDE+ LAD
Sbjct: 121 FRAIEKLLEGCRSKYATGDEVQLAD 145
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/64 (43%), Positives = 41/64 (64%)
Frame = +3
Query: 63 SCSWRVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPMEQVPSLCIDGHTLIESLN 242
SCS+RVRIALNLK I Y+ +AV+ +G +Y +NP++ VP+L T+ +SL
Sbjct: 18 SCSYRVRIALNLKGIDYEYRAVT--RGD-----PDYGKINPIKYVPALVDGDFTISDSLA 70
Query: 243 IMHY 254
I+ Y
Sbjct: 71 IILY 74
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 35.1 bits (77), Expect = 0.039
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 72 WRVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPMEQVPSLCIDGHTLIESLNIMH 251
W R+ + L+E + + V + + GG+ E+ A NP ++P L TL +S I
Sbjct: 14 WMARVLVALEEAGAEYEVVPMSRSGGDHRRPEHLARNPFGEIPVLEDGDLTLYQSRAIAR 73
Query: 252 Y 254
Y
Sbjct: 74 Y 74
>01_05_0336 - 21111048-21111800
Length = 250
Score = 30.7 bits (66), Expect = 0.85
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 75 RVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPME-QVPSLCIDGHTLIESLNIMH 251
RVR+ALNLK + Y+ V L G+ + A NP+ +VP L G + ES+ I+
Sbjct: 28 RVRLALNLKGLSYEYVEVDL---AGKS--DLLLAANPVHAKVPVLLHAGRPVCESMLIVE 82
Query: 252 Y 254
Y
Sbjct: 83 Y 83
>07_03_0759 -
21299502-21299807,21299889-21300039,21300151-21300388,
21300729-21300939,21301018-21301133,21301388-21301519,
21302179-21303073
Length = 682
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 33 AASIILILAHSCSWRVRIALNLKEIPYDIKAV 128
AA +++++A+ C WR R +PYDI+++
Sbjct: 317 AAMLLIVVAYFCCWRRRRPEEQTFLPYDIQSI 348
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +3
Query: 81 RIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPMEQVPSLCIDGHTLIESLNIMHY 254
R+ + L+E+ D + V++ GEQ+ E+ NP ++P+L L ES I Y
Sbjct: 17 RVLVCLEEVGADYELVTVDFLAGEQNSPEHVERNPFGKIPALQDGDLVLFESRAIAKY 74
>07_01_0489 + 3694562-3695269
Length = 235
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 75 RVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPM-EQVPSLCIDGHTLIESLNIMH 251
RVR+ALNLK + Y+ + GGG+ A NP+ ++VP L + + ES I+
Sbjct: 26 RVRLALNLKGLAYEFIEEEI--GGGKSEL--LLASNPVHKKVPVLLHRSNPICESQVIVQ 81
Query: 252 Y 254
Y
Sbjct: 82 Y 82
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +3
Query: 75 RVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPMEQVPSLCIDGHTLIESLNIMHY 254
RV L K++P+ ++ V + KG E + + P QVP+ T+ ES I Y
Sbjct: 18 RVAACLLEKDVPFQVEPVDMSKG--EHKSPSFLKLQPFGQVPAFKDSLTTVFESRAICRY 75
>01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319
Length = 221
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +3
Query: 81 RIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPMEQVPSLCIDGHTLIESLNIMHY*R 260
R+ L L+E+ D + V + G E ++ A NP QVP+ L ES I Y
Sbjct: 17 RVLLCLEEVGADYEIVDVDFGDREHKGPDHLARNPFGQVPAFQDGDLMLFESRAICRYIL 76
Query: 261 RQDHR 275
R+ HR
Sbjct: 77 RK-HR 80
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +3
Query: 75 RVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPMEQVPSLCIDGHTLIESLNIMHY 254
RV LN K + +D+ V L +Q + A+NP Q+P L L ES I Y
Sbjct: 21 RVATVLNEKGLDFDLVPVDLRTAAHKQP--HFLALNPFGQIPVLQDGDEVLYESRAINRY 78
>01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110
Length = 215
Score = 29.1 bits (62), Expect = 2.6
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 69 SWRV-RIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPMEQVPSLCIDGHTLIESLNI 245
SW V R L+E + + V L GE ++ A NP QVP+L L ES I
Sbjct: 12 SWNVTRCVAVLEEAGAEYEIVPLDFSKGEHKAPDHLARNPFGQVPALQDGDLFLWESRAI 71
Query: 246 MHY*RRQDHRGLL 284
Y R++ LL
Sbjct: 72 CKYVCRKNKPELL 84
>10_08_0724 + 20114796-20115506
Length = 236
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 75 RVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPM-EQVPSLCIDGHTLIESLNIMH 251
RVR+ LNLK +PY+ +L G++ + A NP+ + VP L G + ES I+
Sbjct: 20 RVRVVLNLKSLPYEYVEENL----GDK-SDLLLASNPVHKSVPVLLHAGRPVNESQVIVQ 74
Query: 252 Y 254
Y
Sbjct: 75 Y 75
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +3
Query: 78 VRIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPMEQVPSLCIDGHTLIESLNIMHY* 257
+RI + L+E+ + + V + GE + + NP QVP+ TL ES I Y
Sbjct: 16 MRILVCLEEVGAEYEVVPVDMSTGEHKRPPHISRNPFGQVPAFEDGDLTLFESRAISKYI 75
Query: 258 RRQDHRGLL 284
R+ LL
Sbjct: 76 LRKHGSDLL 84
>10_08_0725 + 20126821-20127528
Length = 235
Score = 28.3 bits (60), Expect = 4.5
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 75 RVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPMEQ-VPSLCIDGHTLIESLNIMH 251
RVR LNLK +PY+ +L G++ + A NP+ + VP L G + ES I+
Sbjct: 20 RVRFVLNLKSLPYEFVEENL----GDK-SDLLLASNPVNKTVPVLLHAGRPVNESQVILQ 74
Query: 252 Y 254
Y
Sbjct: 75 Y 75
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -3
Query: 392 PHQHKLAQSDSAMAVFLRLSFHKFHELLPA*SNL--EA*EASVVLSPLVMHD 243
P + S SA + +R S+H FH L+ +NL A E ++L LV+H+
Sbjct: 376 PRHVSVGGSGSARSRRMRDSYHGFHHLMIEDNNLGRSAAERFMMLDQLVIHE 427
>04_04_1142 +
31194801-31194952,31195548-31196037,31196463-31196546,
31196611-31196682,31196967-31197026,31197299-31197310
Length = 289
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 242 HHALLEETRPQRPLMPQDCFKRAKVREICEMIASGI 349
HHAL + L+P DCF +CE +GI
Sbjct: 193 HHALAACPGQAQGLVPPDCFFEFSSEALCEGSTTGI 228
>01_06_0342 - 28562233-28562610,28562688-28563023
Length = 237
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 75 RVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYXAVNPM-EQVPSLCIDGHTLIESLNIMH 251
RVR+AL +K + Y+ L + NP+ E+VP L G + ESL ++
Sbjct: 23 RVRVALGMKGLSYEYTEEDL-----SSKSDHLLRSNPVHEKVPVLIHGGRPVCESLVVLE 77
Query: 252 Y 254
Y
Sbjct: 78 Y 78
>01_02_0049 +
10641363-10641563,10641640-10641750,10641893-10642123,
10642253-10642357,10642546-10642704
Length = 268
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +2
Query: 305 RAKVREICEMIASGIQPLQNLIVLIYVGEETKKEWSQHWVTRGFRAIEKL 454
RA++R++ +M+ +PL+ L + + ++T + + W + GFR I +
Sbjct: 208 RAQLRKLHKMVERRDKPLKKLQSRLPLKQQTACDKQKLWESSGFRIIASM 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,390,769
Number of Sequences: 37544
Number of extensions: 305566
Number of successful extensions: 638
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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